Information for motif20


Reverse Opposite:

p-value:1e-20
log p-value:-4.681e+01
Information Content per bp:1.778
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif6.41%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.59%
Average Position of motif in Targets146.1 +/- 87.2bp
Average Position of motif in Background192.8 +/- 56.9bp
Strand Bias (log2 ratio + to - strand density)0.9
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer

Match Rank:1
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:ATTGCATG---
-TTGCGTGCVA

MA0006.1_Arnt::Ahr/Jaspar

Match Rank:2
Score:0.66
Offset:2
Orientation:forward strand
Alignment:ATTGCATG
--TGCGTG

PB0028.1_Hbp1_1/Jaspar

Match Rank:3
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--ATTGCATG------
ACTATGAATGAATGAT

Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:4
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--ATTGCATG-----
CCATTGTATGCAAAT

MA0019.1_Ddit3::Cebpa/Jaspar

Match Rank:5
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---ATTGCATG-
GGGATTGCATNN

PB0170.1_Sox17_2/Jaspar

Match Rank:6
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----ATTGCATG-----
NTTNTATGAATGTGNNC

PB0178.1_Sox8_2/Jaspar

Match Rank:7
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----ATTGCATG-
NNTNTCATGAATGT

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:8
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---ATTGCATG
NNACTTGCCTT

MA0070.1_PBX1/Jaspar

Match Rank:9
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:ATTGCATG----
TTTGATTGATGN

PB0068.1_Sox1_1/Jaspar

Match Rank:10
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----ATTGCATG----
NNNTATTGAATTGNNN