Information for motif23


Reverse Opposite:

p-value:1e-20
log p-value:-4.623e+01
Information Content per bp:1.731
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif8.08%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif1.01%
Average Position of motif in Targets146.1 +/- 83.9bp
Average Position of motif in Background173.5 +/- 45.8bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.79
Offset:1
Orientation:forward strand
Alignment:ACACAGCAGC---
-CACAGCAGGGGG

PB0205.1_Zic1_2/Jaspar

Match Rank:2
Score:0.79
Offset:-2
Orientation:forward strand
Alignment:--ACACAGCAGC---
CCACACAGCAGGAGA

PB0207.1_Zic3_2/Jaspar

Match Rank:3
Score:0.77
Offset:-2
Orientation:forward strand
Alignment:--ACACAGCAGC---
GAGCACAGCAGGACA

POL009.1_DCE_S_II/Jaspar

Match Rank:4
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:ACACAGCAGC
-CACAGN---

PB0206.1_Zic2_2/Jaspar

Match Rank:5
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--ACACAGCAGC---
CCACACAGCAGGAGA

PB0050.1_Osr1_1/Jaspar

Match Rank:6
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--ACACAGCAGC----
ATTTACAGTAGCAAAA

PB0051.1_Osr2_1/Jaspar

Match Rank:7
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--ACACAGCAGC----
ATGTACAGTAGCAAAG

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:8
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--ACACAGCAGC
TGAGTCAGCA--

MA0522.1_Tcf3/Jaspar

Match Rank:9
Score:0.68
Offset:1
Orientation:forward strand
Alignment:ACACAGCAGC--
-CACAGCTGCAG

SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:10
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:ACACAGCAGC-
---CAGCTGNT