Information for motif27


Reverse Opposite:

p-value:1e-16
log p-value:-3.823e+01
Information Content per bp:1.530
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif5.57%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.54%
Average Position of motif in Targets141.6 +/- 100.0bp
Average Position of motif in Background162.7 +/- 89.6bp
Strand Bias (log2 ratio + to - strand density)2.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0063.1_Sox13_1/Jaspar

Match Rank:1
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--TAGCTTGTTCTT--
AANTTATTGTTCTNNA

PB0093.1_Zfp105_1/Jaspar

Match Rank:2
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:TAGCTTGTTCTT----
-NTNTTGTTGTTTGTN

MA0007.2_AR/Jaspar

Match Rank:3
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---TAGCTTGTTCTT
GNACANNNTGTTCTT

MA0164.1_Nr2e3/Jaspar

Match Rank:4
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TAGCTTGTTCTT
AAGCTTG-----

PB0119.1_Foxa2_2/Jaspar

Match Rank:5
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TAGCTTGTTCTT---
NCNTTTGTTATTTNN

PB0072.1_Sox5_1/Jaspar

Match Rank:6
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--TAGCTTGTTCTT--
NNTTTATTGTTCTNNN

PB0074.1_Sox8_1/Jaspar

Match Rank:7
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---TAGCTTGTTCTT--
GTATCTATTGTTCTTTA

PB0061.1_Sox11_1/Jaspar

Match Rank:8
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---TAGCTTGTTCTT--
NNNTCCTTTGTTCTNNN

MF0011.1_HMG_class/Jaspar

Match Rank:9
Score:0.56
Offset:3
Orientation:forward strand
Alignment:TAGCTTGTTCTT
---ATTGTT---

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:10
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:TAGCTTGTTCTT--
----CTGTTCCTGG