Information for motif3


Reverse Opposite:

p-value:1e-29
log p-value:-6.714e+01
Information Content per bp:1.575
Number of Target Sequences with motif37.0
Percentage of Target Sequences with motif10.31%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif1.10%
Average Position of motif in Targets139.0 +/- 95.8bp
Average Position of motif in Background215.3 +/- 59.5bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0114.2_HNF4A/Jaspar

Match Rank:1
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GGAGGHWTTTGK----
-CTGGACTTTGGACTC

MA0484.1_HNF4G/Jaspar

Match Rank:2
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:GGAGGHWTTTGK-----
--TGGACTTTGNNCTCN

HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:3
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:GGAGGHWTTTGK------
--TGGACTTTGNNCTNTG

MA0090.1_TEAD1/Jaspar

Match Rank:4
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GGAGGHWTTTGK
CNGAGGAATGTG-

PB0071.1_Sox4_1/Jaspar

Match Rank:5
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:GGAGGHWTTTGK------
-TNNTCCTTTGTTCTNNT

PB0134.1_Hnf4a_2/Jaspar

Match Rank:6
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--GGAGGHWTTTGK--
NNATTGGACTTTNGNN

MA0514.1_Sox3/Jaspar

Match Rank:7
Score:0.52
Offset:5
Orientation:forward strand
Alignment:GGAGGHWTTTGK---
-----CCTTTGTTTT

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:8
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--GGAGGHWTTTGK
NNTGTGGTTT----

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:9
Score:0.51
Offset:5
Orientation:forward strand
Alignment:GGAGGHWTTTGK-
-----CCWTTGTY

PB0204.1_Zfp740_2/Jaspar

Match Rank:10
Score:0.51
Offset:-7
Orientation:reverse strand
Alignment:-------GGAGGHWTTTGK
ANTNCCGGGGGGAANTT--