Information for motif33


Reverse Opposite:

p-value:1e-13
log p-value:-3.013e+01
Information Content per bp:1.776
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif4.74%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.61%
Average Position of motif in Targets168.0 +/- 73.0bp
Average Position of motif in Background42.3 +/- 7.0bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0122.1_Foxk1_2/Jaspar

Match Rank:1
Score:0.84
Offset:-3
Orientation:reverse strand
Alignment:---TGYTGTTGTT--
NNNTGTTGTTGTTNG

PB0120.1_Foxj1_2/Jaspar

Match Rank:2
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-TGYTGTTGTT----
GTNTTGTTGTGANNT

PB0093.1_Zfp105_1/Jaspar

Match Rank:3
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-TGYTGTTGTT----
NTNTTGTTGTTTGTN

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer

Match Rank:4
Score:0.67
Offset:1
Orientation:forward strand
Alignment:TGYTGTTGTT-
-GCTGTGGTTT

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:5
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:TGYTGTTGTT--
--CTGTGGTTTN

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:6
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:TGYTGTTGTT-
-NNTGTGGTTT

MA0133.1_BRCA1/Jaspar

Match Rank:7
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-TGYTGTTGTT
GTGTTGN----

MA0002.2_RUNX1/Jaspar

Match Rank:8
Score:0.62
Offset:0
Orientation:forward strand
Alignment:TGYTGTTGTT-
GTCTGTGGTTT

PB0119.1_Foxa2_2/Jaspar

Match Rank:9
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--TGYTGTTGTT---
NCNTTTGTTATTTNN

PB0123.1_Foxl1_2/Jaspar

Match Rank:10
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--TGYTGTTGTT----
NNTTTTGTTTTGATNT