Information for motif39


Reverse Opposite:

p-value:1e-10
log p-value:-2.376e+01
Information Content per bp:1.929
Number of Target Sequences with motif45.0
Percentage of Target Sequences with motif12.53%
Number of Background Sequences with motif11.4
Percentage of Background Sequences with motif4.26%
Average Position of motif in Targets145.1 +/- 90.9bp
Average Position of motif in Background150.7 +/- 76.2bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0593.1_FOXP2/Jaspar

Match Rank:1
Score:0.79
Offset:-2
Orientation:reverse strand
Alignment:--TGTTTTCT-
TNTGTTTACTT

MA0480.1_Foxo1/Jaspar

Match Rank:2
Score:0.79
Offset:-3
Orientation:forward strand
Alignment:---TGTTTTCT
TCCTGTTTACA

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.79
Offset:0
Orientation:reverse strand
Alignment:TGTTTTCT--
TGTTTACTTT

Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer

Match Rank:4
Score:0.79
Offset:-1
Orientation:forward strand
Alignment:-TGTTTTCT
CTGTTTAC-

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:5
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:TGTTTTCT--
TGTTTACTTT

MA0481.1_FOXP1/Jaspar

Match Rank:6
Score:0.77
Offset:-3
Orientation:reverse strand
Alignment:---TGTTTTCT----
CTTTGTTTACTTTTN

FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer

Match Rank:7
Score:0.77
Offset:-3
Orientation:forward strand
Alignment:---TGTTTTCT-
NYYTGTTTACHN

MA0148.3_FOXA1/Jaspar

Match Rank:8
Score:0.76
Offset:-4
Orientation:forward strand
Alignment:----TGTTTTCT---
TCCATGTTTACTTTG

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:9
Score:0.76
Offset:-2
Orientation:forward strand
Alignment:--TGTTTTCT--
CNTGTTTACATA

MF0005.1_Forkhead_class/Jaspar

Match Rank:10
Score:0.75
Offset:0
Orientation:forward strand
Alignment:TGTTTTCT-
TGTTTATTT