Information for motif42


Reverse Opposite:

p-value:1e-9
log p-value:-2.256e+01
Information Content per bp:1.510
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif3.90%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.68%
Average Position of motif in Targets130.9 +/- 71.6bp
Average Position of motif in Background185.6 +/- 19.4bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0103.1_Zic3_1/Jaspar

Match Rank:1
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----CCCGGCGGCGGC
CCCCCCCGGGGGGGT-

PB0101.1_Zic1_1/Jaspar

Match Rank:2
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---CCCGGCGGCGGC
CACCCCCGGGGGGG-

MA0162.2_EGR1/Jaspar

Match Rank:3
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CCCGGCGGCGGC--
GGCGGGGGCGGGGG

Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.58
Offset:3
Orientation:forward strand
Alignment:CCCGGCGGCGGC
---GGGGGGGG-

PB0102.1_Zic2_1/Jaspar

Match Rank:5
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----CCCGGCGGCGGC
CCCCCCCGGGGGGGT-

PB0010.1_Egr1_1/Jaspar

Match Rank:6
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CCCGGCGGCGGC
ANTGCGGGGGCGGN

PB0085.1_Tcfap2a_1/Jaspar

Match Rank:7
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CCCGGCGGCGGC
ATTCCCTGAGGGGAA

MA0516.1_SP2/Jaspar

Match Rank:8
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CCCGGCGGCGGC--
GGGNGGGGGCGGGGC

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CCCGGCGGCGGC-------
GCCASCAGGGGGCGCYVNNG

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---CCCGGCGGCGGC
ATGCCCTGAGGC---