Information for motif7


Reverse Opposite:

p-value:1e-24
log p-value:-5.668e+01
Information Content per bp:1.655
Number of Target Sequences with motif51.0
Percentage of Target Sequences with motif14.21%
Number of Background Sequences with motif7.0
Percentage of Background Sequences with motif2.60%
Average Position of motif in Targets148.2 +/- 75.5bp
Average Position of motif in Background127.5 +/- 38.4bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0117.1_Nkx3-1/Jaspar

Match Rank:1
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----AACTTCTTAA---
TACTAAGTACTTAAATG

PH0112.1_Nkx2-3/Jaspar

Match Rank:2
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----AACTTCTTAA--
CNTTAAGTACTTAANG

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:3
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---AACTTCTTAA----
CTTAACCACTTAAGGAT

PH0004.1_Nkx3-2/Jaspar

Match Rank:4
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---AACTTCTTAA----
CATAACCACTTAACAAC

PH0088.1_Isl2/Jaspar

Match Rank:5
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---AACTTCTTAA---
CAAAATCAATTAATTT

PH0028.1_En1/Jaspar

Match Rank:6
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---AACTTCTTAA---
GCGAACTAATTAATGC

PH0040.1_Hmbox1/Jaspar

Match Rank:7
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---AACTTCTTAA----
GAAAACTAGTTAACATC

PH0108.1_Msx3/Jaspar

Match Rank:8
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---AACTTCTTAA---
CAAAACCAATTAATTT

PH0116.1_Nkx2-9/Jaspar

Match Rank:9
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----AACTTCTTAA---
TTTTAAGTACTTAAATT

PH0172.1_Tlx2/Jaspar

Match Rank:10
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:AACTTCTTAA-------
AANTTATTAATTAATTA