Information for motif8


Reverse Opposite:

p-value:1e-24
log p-value:-5.642e+01
Information Content per bp:1.492
Number of Target Sequences with motif33.0
Percentage of Target Sequences with motif9.19%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif1.06%
Average Position of motif in Targets108.6 +/- 76.8bp
Average Position of motif in Background218.3 +/- 41.7bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0172.1_Sox1_2/Jaspar

Match Rank:1
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--ATAACAGTCA---
NNNTAACAATTATAN

PB0062.1_Sox12_1/Jaspar

Match Rank:2
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----ATAACAGTCA
NTTNAGAACAATTA

PH0046.1_Hoxa10/Jaspar

Match Rank:3
Score:0.63
Offset:-6
Orientation:forward strand
Alignment:------ATAACAGTCA
TAGGTAATAAAATTCA

PH0078.1_Hoxd13/Jaspar

Match Rank:4
Score:0.61
Offset:-6
Orientation:forward strand
Alignment:------ATAACAGTCA
CTACCAATAAAATTCT

PH0075.1_Hoxd10/Jaspar

Match Rank:5
Score:0.61
Offset:-6
Orientation:forward strand
Alignment:------ATAACAGTCA-
AATGCAATAAAATTTAT

MA0087.1_Sox5/Jaspar

Match Rank:6
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:ATAACAGTCA
-NAACAAT--

MA0084.1_SRY/Jaspar

Match Rank:7
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-ATAACAGTCA
GTAAACAAT--

PB0119.1_Foxa2_2/Jaspar

Match Rank:8
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----ATAACAGTCA-
AAAAATAACAAACGG

MF0009.1_TRP(MYB)_class/Jaspar

Match Rank:9
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:ATAACAGTCA
--AACCGANA

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:10
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----ATAACAGTCA
NCYAATAAAA----