Information for motif21


Reverse Opposite:

p-value:1e-18
log p-value:-4.190e+01
Information Content per bp:1.710
Number of Target Sequences with motif27.0
Percentage of Target Sequences with motif10.80%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif1.43%
Average Position of motif in Targets168.2 +/- 90.6bp
Average Position of motif in Background180.1 +/- 38.5bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR/Cell-Cycle-Exp/Homer

Match Rank:1
Score:0.73
Offset:3
Orientation:reverse strand
Alignment:AAATTTGMAGCC-
---TTTGAAACCG

Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:2
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:AAATTTGMAGCC
--ATTTGCATAT

MA0507.1_POU2F2/Jaspar

Match Rank:3
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AAATTTGMAGCC
TTCATTTGCATAT

PH0144.1_Pou2f2/Jaspar

Match Rank:4
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--AAATTTGMAGCC--
TNTAATTTGCATANNN

PH0145.1_Pou2f3/Jaspar

Match Rank:5
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--AAATTTGMAGCC--
TNTAATTTGCATACNA

Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.59
Offset:2
Orientation:forward strand
Alignment:AAATTTGMAGCC
--ATTTGCATAA

POL008.1_DCE_S_I/Jaspar

Match Rank:7
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:AAATTTGMAGCC
-----NGAAGC-

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529/Homer

Match Rank:8
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:AAATTTGMAGCC
CTATTTTTGG--

MA0052.2_MEF2A/Jaspar

Match Rank:9
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---AAATTTGMAGCC
NNGCTATTTTTAGCN

POL010.1_DCE_S_III/Jaspar

Match Rank:10
Score:0.55
Offset:7
Orientation:forward strand
Alignment:AAATTTGMAGCC
-------CAGCC