Information for motif27


Reverse Opposite:

p-value:1e-15
log p-value:-3.579e+01
Information Content per bp:1.661
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif7.60%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.94%
Average Position of motif in Targets141.2 +/- 87.7bp
Average Position of motif in Background261.7 +/- 13.8bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0042.1_FOXI1/Jaspar

Match Rank:1
Score:0.73
Offset:-4
Orientation:forward strand
Alignment:----GTTTGTTTCA
GGATGTTTGTTT--

MA0041.1_Foxd3/Jaspar

Match Rank:2
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----GTTTGTTTCA
GAATGTTTGTTT--

MA0514.1_Sox3/Jaspar

Match Rank:3
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-GTTTGTTTCA
CCTTTGTTTT-

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:GTTTGTTTCA--
--TGGTTTCAGT

MA0084.1_SRY/Jaspar

Match Rank:5
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:GTTTGTTTCA
-ATTGTTTAN

MF0011.1_HMG_class/Jaspar

Match Rank:6
Score:0.69
Offset:1
Orientation:forward strand
Alignment:GTTTGTTTCA
-ATTGTT---

PB0016.1_Foxj1_1/Jaspar

Match Rank:7
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---GTTTGTTTCA---
NNNNTTTGTTTACNNT

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:8
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:GTTTGTTTCA----
TTTTTTTTCNNGTN

PB0071.1_Sox4_1/Jaspar

Match Rank:9
Score:0.68
Offset:-5
Orientation:reverse strand
Alignment:-----GTTTGTTTCA--
TNNTCCTTTGTTCTNNT

PB0061.1_Sox11_1/Jaspar

Match Rank:10
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----GTTTGTTTCA--
NNNTCCTTTGTTCTNNN