Information for motif3


Reverse Opposite:

p-value:1e-35
log p-value:-8.236e+01
Information Content per bp:1.766
Number of Target Sequences with motif34.0
Percentage of Target Sequences with motif13.60%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.99%
Average Position of motif in Targets156.2 +/- 99.0bp
Average Position of motif in Background146.9 +/- 95.5bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0200.1_Zfp187_2/Jaspar

Match Rank:1
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----CCTAGTTC----
GAGCCCTTGTCCCTAA

PH0040.1_Hmbox1/Jaspar

Match Rank:2
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----CCTAGTTC-----
GAAAACTAGTTAACATC

PB0159.1_Rfx4_2/Jaspar

Match Rank:3
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CCTAGTTC----
TACCCTAGTTACCGA

PH0168.1_Hnf1b/Jaspar

Match Rank:4
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---CCTAGTTC------
ANNNCTAGTTAACNGNN

PB0061.1_Sox11_1/Jaspar

Match Rank:5
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----CCTAGTTC----
NNNTCCTTTGTTCTNNN

PB0071.1_Sox4_1/Jaspar

Match Rank:6
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----CCTAGTTC----
TNNTCCTTTGTTCTNNT

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CCTAGTTC
NCCATTGTTC

MA0072.1_RORA_2/Jaspar

Match Rank:8
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----CCTAGTTC--
TTGACCTANTTATN

MA0515.1_Sox6/Jaspar

Match Rank:9
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CCTAGTTC-
CCATTGTTTT

MA0512.1_Rxra/Jaspar

Match Rank:10
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CCTAGTTC---
CAAAGGTCAGA