Information for motif35


Reverse Opposite:

p-value:1e-9
log p-value:-2.176e+01
Information Content per bp:1.530
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif7.20%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif1.36%
Average Position of motif in Targets168.4 +/- 80.3bp
Average Position of motif in Background232.5 +/- 52.2bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0115.1_Nkx2-6/Jaspar

Match Rank:1
Score:0.72
Offset:-6
Orientation:forward strand
Alignment:------ACTTAACTTT
TAAGCCACTTAACATT

PH0114.1_Nkx2-5/Jaspar

Match Rank:2
Score:0.68
Offset:-6
Orientation:forward strand
Alignment:------ACTTAACTTT
TAAGCCACTTGAATTT

PH0113.1_Nkx2-4/Jaspar

Match Rank:3
Score:0.68
Offset:-6
Orientation:forward strand
Alignment:------ACTTAACTTT
TAAGCCACTTGAAATT

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:4
Score:0.66
Offset:-7
Orientation:forward strand
Alignment:-------ACTTAACTTT
CTTAACCACTTAAGGAT

PH0171.1_Nkx2-1/Jaspar

Match Rank:5
Score:0.66
Offset:-6
Orientation:forward strand
Alignment:------ACTTAACTTT
TAAGCCACTTGAAATT

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:6
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--ACTTAACTTT
NNACTTACCTN-

PB0081.1_Tcf1_1/Jaspar

Match Rank:7
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----ACTTAACTTT---
ACTTAGTTAACTAAAAA

PH0004.1_Nkx3-2/Jaspar

Match Rank:8
Score:0.64
Offset:-7
Orientation:forward strand
Alignment:-------ACTTAACTTT
CATAACCACTTAACAAC

MA0124.1_NKX3-1/Jaspar

Match Rank:9
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--ACTTAACTTT
ATACTTA-----

MA0035.3_Gata1/Jaspar

Match Rank:10
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-ACTTAACTTT
TTCTTATCTGT