Information for motif41


Reverse Opposite:

p-value:1e-4
log p-value:-9.286e+00
Information Content per bp:1.623
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif4.40%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif1.57%
Average Position of motif in Targets178.8 +/- 86.3bp
Average Position of motif in Background180.5 +/- 97.3bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0051.1_Osr2_1/Jaspar

Match Rank:1
Score:0.77
Offset:-4
Orientation:reverse strand
Alignment:----GGTACCGT----
CNNNGCTACTGTANNN

PB0050.1_Osr1_1/Jaspar

Match Rank:2
Score:0.76
Offset:-4
Orientation:reverse strand
Alignment:----GGTACCGT----
TNNTGCTACTGTNNNN

PB0156.1_Plagl1_2/Jaspar

Match Rank:3
Score:0.66
Offset:-7
Orientation:forward strand
Alignment:-------GGTACCGT--
GCTGGGGGGTACCCCTT

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:4
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GGTACCGT
CCAGGAACAG-

MA0032.1_FOXC1/Jaspar

Match Rank:5
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:GGTACCGT--
--TACTNNNN

PB0045.1_Myb_1/Jaspar

Match Rank:6
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---GGTACCGT------
ATGGAAACCGTTATTTT

MA0111.1_Spz1/Jaspar

Match Rank:7
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---GGTACCGT
GCTGTTACCCT

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:8
Score:0.55
Offset:-6
Orientation:forward strand
Alignment:------GGTACCGT---
ACTCCAAGTACTTGGAA

PB0046.1_Mybl1_1/Jaspar

Match Rank:9
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---GGTACCGT------
TTGAAAACCGTTAATTT

PB0159.1_Rfx4_2/Jaspar

Match Rank:10
Score:0.54
Offset:-7
Orientation:forward strand
Alignment:-------GGTACCGT
TACCCTAGTTACCGA