Information for motif5


Reverse Opposite:

p-value:1e-26
log p-value:-5.992e+01
Information Content per bp:1.836
Number of Target Sequences with motif34.0
Percentage of Target Sequences with motif13.60%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif1.40%
Average Position of motif in Targets134.5 +/- 87.2bp
Average Position of motif in Background146.0 +/- 98.8bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL012.1_TATA-Box/Jaspar

Match Rank:1
Score:0.80
Offset:-7
Orientation:reverse strand
Alignment:-------TTTTATAC
NNNNNNCTTTTATAN

MA0108.2_TBP/Jaspar

Match Rank:2
Score:0.79
Offset:-7
Orientation:reverse strand
Alignment:-------TTTTATAC
NNNNNNCTTTTATAN

MA0151.1_ARID3A/Jaspar

Match Rank:3
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:TTTTATAC
TTTAAT--

PH0078.1_Hoxd13/Jaspar

Match Rank:4
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----TTTTATAC----
NNANTTTTATTGGNNN

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:5
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TTTTATAC--
TTTTATTRGN

MA0040.1_Foxq1/Jaspar

Match Rank:6
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----TTTTATAC
TATTGTTTATT-

PB0105.1_Arid3a_2/Jaspar

Match Rank:7
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---TTTTATAC----
NNATNTGATANNNNN

MA0032.1_FOXC1/Jaspar

Match Rank:8
Score:0.63
Offset:5
Orientation:reverse strand
Alignment:TTTTATAC-----
-----TACTNNNN

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:9
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATAC-
NTTTTATGAC

MA0465.1_CDX2/Jaspar

Match Rank:10
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TTTTATAC---
TTTTATGGCTN