Information for motif6


Reverse Opposite:

p-value:1e-24
log p-value:-5.635e+01
Information Content per bp:1.763
Number of Target Sequences with motif26.0
Percentage of Target Sequences with motif10.40%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.99%
Average Position of motif in Targets129.4 +/- 80.7bp
Average Position of motif in Background131.4 +/- 5.5bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.19
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL009.1_DCE_S_II/Jaspar

Match Rank:1
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:AACACAGTTACA
--CACAGN----

PB0159.1_Rfx4_2/Jaspar

Match Rank:2
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-AACACAGTTACA--
TACCCTAGTTACCGA

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.58
Offset:3
Orientation:forward strand
Alignment:AACACAGTTACA-
---CCAGGAACAG

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.56
Offset:1
Orientation:forward strand
Alignment:AACACAGTTACA-
-SCCTAGCAACAG

MA0100.2_Myb/Jaspar

Match Rank:5
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:AACACAGTTACA
-TGGCAGTTGN-

PB0050.1_Osr1_1/Jaspar

Match Rank:6
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-AACACAGTTACA---
ATTTACAGTAGCAAAA

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:7
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-AACACAGTTACA----
CTACTTGGATACGGAAT

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer

Match Rank:8
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--AACACAGTTACA
AAACCACAGC----

PB0051.1_Osr2_1/Jaspar

Match Rank:9
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-AACACAGTTACA---
ATGTACAGTAGCAAAG

MA0522.1_Tcf3/Jaspar

Match Rank:10
Score:0.52
Offset:2
Orientation:forward strand
Alignment:AACACAGTTACA-
--CACAGCTGCAG