Information for motif7


Reverse Opposite:

p-value:1e-24
log p-value:-5.635e+01
Information Content per bp:1.688
Number of Target Sequences with motif26.0
Percentage of Target Sequences with motif10.40%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.93%
Average Position of motif in Targets147.8 +/- 84.3bp
Average Position of motif in Background151.9 +/- 27.6bp
Strand Bias (log2 ratio + to - strand density)1.1
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0187.1_Tcf7_2/Jaspar

Match Rank:1
Score:0.73
Offset:-5
Orientation:reverse strand
Alignment:-----TGTAATAA--
NNNTTTNTAATACNG

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:2
Score:0.73
Offset:1
Orientation:forward strand
Alignment:TGTAATAA---
-GTCATAAAAN

PH0046.1_Hoxa10/Jaspar

Match Rank:3
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--TGTAATAA------
TAGGTAATAAAATTCA

PH0012.1_Cdx1/Jaspar

Match Rank:4
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---TGTAATAA-----
TAAGGTAATAAAATTA

PH0013.1_Cdx2/Jaspar

Match Rank:5
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---TGTAATAA-----
AAAGGTAATAAAATTT

PH0072.1_Hoxc8/Jaspar

Match Rank:6
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----TGTAATAA----
TTGGGGTAATTAACGT

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:7
Score:0.70
Offset:0
Orientation:forward strand
Alignment:TGTAATAA
GKTAATGR

Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer

Match Rank:8
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-TGTAATAA-
ADBTAATTAR

PB0001.1_Arid3a_1/Jaspar

Match Rank:9
Score:0.69
Offset:-4
Orientation:reverse strand
Alignment:----TGTAATAA-----
NNNTTTTAATTAANNNN

PH0022.1_Dlx3/Jaspar

Match Rank:10
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---TGTAATAA------
NNNGGTAATTATNGNGN