Information for motif8


Reverse Opposite:

p-value:1e-23
log p-value:-5.327e+01
Information Content per bp:1.606
Number of Target Sequences with motif25.0
Percentage of Target Sequences with motif10.00%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.46%
Average Position of motif in Targets146.8 +/- 76.7bp
Average Position of motif in Background18.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0078.1_Hoxd13/Jaspar

Match Rank:1
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--AATTTTAGTGAT--
NNANTTTTATTGGNNN

PH0075.1_Hoxd10/Jaspar

Match Rank:2
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---AATTTTAGTGAT--
NTNAATTTTATTGNATT

PH0057.1_Hoxb13/Jaspar

Match Rank:3
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--AATTTTAGTGAT--
NNAATTTTATTGGNTN

PH0064.1_Hoxb9/Jaspar

Match Rank:4
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--AATTTTAGTGAT--
NGANTTTTATGGCTCN

PB0002.1_Arid5a_1/Jaspar

Match Rank:5
Score:0.64
Offset:-6
Orientation:reverse strand
Alignment:------AATTTTAGTGAT
NNTNNCAATATTAG----

PB0064.1_Sox14_1/Jaspar

Match Rank:6
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---AATTTTAGTGAT-
GCTAATTATAATTATC

PB0079.1_Sry_1/Jaspar

Match Rank:7
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---AATTTTAGTGAT-
TATAATTATAATATTC

PB0069.1_Sox21_1/Jaspar

Match Rank:8
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---AATTTTAGTGAT-
NNTAATTATAATNANN

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:9
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:AATTTTAGTGAT
--TTTTATTRGN

PB0001.1_Arid3a_1/Jaspar

Match Rank:10
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-AATTTTAGTGAT----
NNNTTTTAATTAANNNN