Information for motif1


Reverse Opposite:

p-value:1e-19
log p-value:-4.398e+01
Information Content per bp:1.580
Number of Target Sequences with motif1002.0
Percentage of Target Sequences with motif12.24%
Number of Background Sequences with motif2998.2
Percentage of Background Sequences with motif9.21%
Average Position of motif in Targets463.4 +/- 440.6bp
Average Position of motif in Background455.7 +/- 458.6bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CTGGGCRACA-
SCCTAGCAACAG

MA0510.1_RFX5/Jaspar

Match Rank:2
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CTGGGCRACA--
CTCCCTGGCAACAGC

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:3
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CTGGGCRACA---
-TGAGTGACAGSC

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CTGGGCRACA--
NTGATTGACAGN

MA0498.1_Meis1/Jaspar

Match Rank:5
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CTGGGCRACA---
NNNTGAGTGACAGCT

PB0158.1_Rfx3_2/Jaspar

Match Rank:6
Score:0.59
Offset:-7
Orientation:forward strand
Alignment:-------CTGGGCRACA------
ACTGACCCTTGGTTACCACAAAG

MA0509.1_Rfx1/Jaspar

Match Rank:7
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----CTGGGCRACA
GTTGCCATGGCAAC-

PB0117.1_Eomes_2/Jaspar

Match Rank:8
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CTGGGCRACA-------
-NNGGCGACACCTCNNN

MA0513.1_SMAD2::SMAD3::SMAD4/Jaspar

Match Rank:9
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CTGGGCRACA-
AGGTGNCAGACAG

Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CTGGGCRACA
AGGTGHCAGACA