Information for motif11


Reverse Opposite:

p-value:1e-11
log p-value:-2.588e+01
Information Content per bp:1.652
Number of Target Sequences with motif1814.0
Percentage of Target Sequences with motif22.15%
Number of Background Sequences with motif6229.9
Percentage of Background Sequences with motif19.14%
Average Position of motif in Targets482.5 +/- 431.9bp
Average Position of motif in Background497.0 +/- 465.3bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

E-box(HLH)/Promoter/Homer

Match Rank:1
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-GGCTCAMGTG-
CCGGTCACGTGA

PB0007.1_Bhlhb2_1/Jaspar

Match Rank:2
Score:0.69
Offset:-4
Orientation:reverse strand
Alignment:----GGCTCAMGTG--------
NTNNTNGTCACGTGACNNNTNC

USF1(HLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.68
Offset:1
Orientation:forward strand
Alignment:GGCTCAMGTG-
-GGTCACGTGA

MA0093.2_USF1/Jaspar

Match Rank:4
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:GGCTCAMGTG--
-GGTCACGTGGC

PB0057.1_Rxra_1/Jaspar

Match Rank:5
Score:0.66
Offset:-6
Orientation:reverse strand
Alignment:------GGCTCAMGTG-
NTNNNGGGGTCANGNNN

MA0464.1_Bhlhe40/Jaspar

Match Rank:6
Score:0.65
Offset:2
Orientation:forward strand
Alignment:GGCTCAMGTG---
--CTCACGTGCAC

bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GGCTCAMGTG-
-NGKCACGTGM

MA0004.1_Arnt/Jaspar

Match Rank:8
Score:0.65
Offset:4
Orientation:reverse strand
Alignment:GGCTCAMGTG
----CACGTG

PB0157.1_Rara_2/Jaspar

Match Rank:9
Score:0.65
Offset:-6
Orientation:forward strand
Alignment:------GGCTCAMGTG
AGAGCGGGGTCAAGTA

NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer

Match Rank:10
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:GGCTCAMGTG--
--GTCACGTGGM