Information for motif17


Reverse Opposite:

p-value:1e-8
log p-value:-1.875e+01
Information Content per bp:1.765
Number of Target Sequences with motif44.0
Percentage of Target Sequences with motif0.54%
Number of Background Sequences with motif64.0
Percentage of Background Sequences with motif0.20%
Average Position of motif in Targets420.8 +/- 409.3bp
Average Position of motif in Background577.2 +/- 617.8bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.39
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0170.1_Sox17_2/Jaspar

Match Rank:1
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---RGATGTAGGTGG--
NTTNTATGAATGTGNNC

E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:2
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:RGATGTAGGTGG-
---NNCAGGTGNN

MA0598.1_EHF/Jaspar

Match Rank:3
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:RGATGTAGGTGG
-CAGGAAGG---

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:4
Score:0.56
Offset:6
Orientation:forward strand
Alignment:RGATGTAGGTGG--
------AGGTGTCA

MA0057.1_MZF1_5-13/Jaspar

Match Rank:5
Score:0.55
Offset:4
Orientation:forward strand
Alignment:RGATGTAGGTGG--
----GGAGGGGGAA

MA0522.1_Tcf3/Jaspar

Match Rank:6
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:RGATGTAGGTGG-
--NTGCAGCTGTG

PB0124.1_Gabpa_2/Jaspar

Match Rank:7
Score:0.53
Offset:-7
Orientation:reverse strand
Alignment:-------RGATGTAGGTGG
NNNNGGGGGAAGANGG---

PB0161.1_Rxra_2/Jaspar

Match Rank:8
Score:0.53
Offset:0
Orientation:forward strand
Alignment:RGATGTAGGTGG----
TCGCGAAGGTTGTACT

MA0472.1_EGR2/Jaspar

Match Rank:9
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:RGATGTAGGTGG---
GTGCGTGGGCGGGNG

ETS:RUNX/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer

Match Rank:10
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---RGATGTAGGTGG
ACAGGATGTGGT---