Information for motif18


Reverse Opposite:

p-value:1e-8
log p-value:-1.856e+01
Information Content per bp:1.740
Number of Target Sequences with motif32.0
Percentage of Target Sequences with motif0.39%
Number of Background Sequences with motif38.9
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets430.6 +/- 396.0bp
Average Position of motif in Background518.1 +/- 480.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0006.1_Arnt::Ahr/Jaspar

Match Rank:1
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:GTAACACGCTCA
----CACGCA--

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer

Match Rank:2
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GTAACACGCTCA
-TBGCACGCAA-

MA0503.1_Nkx2-5_(var.2)/Jaspar

Match Rank:3
Score:0.56
Offset:3
Orientation:forward strand
Alignment:GTAACACGCTCA--
---AGCCACTCAAG

PB0130.1_Gm397_2/Jaspar

Match Rank:4
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---GTAACACGCTCA-
AGCGGCACACACGCAA

PB0151.1_Myf6_2/Jaspar

Match Rank:5
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GTAACACGCTCA--
AGCAACAGCCGCACC

MA0493.1_Klf1/Jaspar

Match Rank:6
Score:0.53
Offset:1
Orientation:forward strand
Alignment:GTAACACGCTCA
-GGCCACACCCA

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:7
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GTAACACGCTCA
KTTCACACCT---

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:8
Score:0.53
Offset:3
Orientation:forward strand
Alignment:GTAACACGCTCA-
---AASCACTCAA

MA0259.1_HIF1A::ARNT/Jaspar

Match Rank:9
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:GTAACACGCTCA
---GCACGTNC-

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.52
Offset:2
Orientation:forward strand
Alignment:GTAACACGCTCA
--GCCACACCCA