Information for motif20


Reverse Opposite:

p-value:1e-6
log p-value:-1.471e+01
Information Content per bp:1.654
Number of Target Sequences with motif946.0
Percentage of Target Sequences with motif11.55%
Number of Background Sequences with motif3216.7
Percentage of Background Sequences with motif9.88%
Average Position of motif in Targets532.5 +/- 476.9bp
Average Position of motif in Background536.4 +/- 486.3bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.13
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0006.1_Arnt::Ahr/Jaspar

Match Rank:1
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-GCGTGGTGGC
TGCGTG-----

MA0130.1_ZNF354C/Jaspar

Match Rank:2
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:GCGTGGTGGC
--GTGGAT--

Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GCGTGGTGGC
TGCGTGGGYG-

MA0027.1_En1/Jaspar

Match Rank:4
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GCGTGGTGGC-
AAGTAGTGCCC

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer

Match Rank:5
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GCGTGGTGGC
TTGCGTGCVA--

Egr2/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer

Match Rank:6
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GCGTGGTGGC-
NGCGTGGGCGGR

POL006.1_BREu/Jaspar

Match Rank:7
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GCGTGGTGGC
GGCGCGCT---

MA0259.1_HIF1A::ARNT/Jaspar

Match Rank:8
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GCGTGGTGGC
GGACGTGC----

MA0059.1_MYC::MAX/Jaspar

Match Rank:9
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----GCGTGGTGGC
GACCACGTGGT---

PB0039.1_Klf7_1/Jaspar

Match Rank:10
Score:0.56
Offset:-6
Orientation:reverse strand
Alignment:------GCGTGGTGGC
NNAGGGGCGGGGTNNA