Information for motif21


Reverse Opposite:

p-value:1e-6
log p-value:-1.395e+01
Information Content per bp:1.911
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif0.12%
Number of Background Sequences with motif5.8
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets209.5 +/- 159.3bp
Average Position of motif in Background477.1 +/- 632.9bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0091.1_Zbtb3_1/Jaspar

Match Rank:1
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---TGTGCAGAGTAG--
NNNANTGCAGTGCNNTT

PB0044.1_Mtf1_1/Jaspar

Match Rank:2
Score:0.57
Offset:-6
Orientation:forward strand
Alignment:------TGTGCAGAGTAG
GGGCCGTGTGCAAAAA--

PB0026.1_Gm397_1/Jaspar

Match Rank:3
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----TGTGCAGAGTAG
NNGTATGTGCACATNNN

PB0104.1_Zscan4_1/Jaspar

Match Rank:4
Score:0.54
Offset:-5
Orientation:reverse strand
Alignment:-----TGTGCAGAGTAG
NTNTATGTGCACATNNN

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:5
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-TGTGCAGAGTAG
CTGTTCCTGG---

PB0051.1_Osr2_1/Jaspar

Match Rank:6
Score:0.53
Offset:1
Orientation:forward strand
Alignment:TGTGCAGAGTAG-----
-ATGTACAGTAGCAAAG

PB0050.1_Osr1_1/Jaspar

Match Rank:7
Score:0.52
Offset:1
Orientation:forward strand
Alignment:TGTGCAGAGTAG-----
-ATTTACAGTAGCAAAA

PB0114.1_Egr1_2/Jaspar

Match Rank:8
Score:0.52
Offset:2
Orientation:forward strand
Alignment:TGTGCAGAGTAG------
--TGCGGAGTGGGACTGG

MA0032.1_FOXC1/Jaspar

Match Rank:9
Score:0.52
Offset:3
Orientation:forward strand
Alignment:TGTGCAGAGTAG
---GGTAAGTA-

PB0208.1_Zscan4_2/Jaspar

Match Rank:10
Score:0.50
Offset:-7
Orientation:reverse strand
Alignment:-------TGTGCAGAGTAG
NNNNTTGTGTGCTTNN---