Information for motif23


Reverse Opposite:

p-value:1e-5
log p-value:-1.352e+01
Information Content per bp:1.975
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.10%
Number of Background Sequences with motif3.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets545.0 +/- 390.8bp
Average Position of motif in Background169.1 +/- 143.6bp
Strand Bias (log2 ratio + to - strand density)-2.6
Multiplicity (# of sites on avg that occur together)3.50
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:1
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:AGGGAATGTGGT---
---NNHTGTGGTTWN

MA0090.1_TEAD1/Jaspar

Match Rank:2
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--AGGGAATGTGGT
CNGAGGAATGTG--

TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer

Match Rank:3
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-AGGGAATGTGGT
CCWGGAATGY---

ETS:RUNX/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer

Match Rank:4
Score:0.64
Offset:0
Orientation:forward strand
Alignment:AGGGAATGTGGT
ACAGGATGTGGT

MA0511.1_RUNX2/Jaspar

Match Rank:5
Score:0.64
Offset:0
Orientation:forward strand
Alignment:AGGGAATGTGGT---
GGGGTTTGTGGTTTG

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:6
Score:0.64
Offset:5
Orientation:reverse strand
Alignment:AGGGAATGTGGT---
-----CTGTGGTTTN

TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-AGGGAATGTGGT
NCTGGAATGC---

PRDM1/BMI1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---AGGGAATGTGGT
GAAAGTGAAAGT---

MA0508.1_PRDM1/Jaspar

Match Rank:9
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----AGGGAATGTGGT
AGAAAGTGAAAGTGA-

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer

Match Rank:10
Score:0.61
Offset:4
Orientation:forward strand
Alignment:AGGGAATGTGGT--
----GCTGTGGTTT