Information for motif24


Reverse Opposite:

p-value:1e-5
log p-value:-1.350e+01
Information Content per bp:1.735
Number of Target Sequences with motif52.0
Percentage of Target Sequences with motif0.63%
Number of Background Sequences with motif99.9
Percentage of Background Sequences with motif0.31%
Average Position of motif in Targets477.7 +/- 417.8bp
Average Position of motif in Background528.9 +/- 454.6bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0133.1_BRCA1/Jaspar

Match Rank:1
Score:0.68
Offset:2
Orientation:forward strand
Alignment:AGCSAACACG
--ACAACAC-

PB0117.1_Eomes_2/Jaspar

Match Rank:2
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-AGCSAACACG-----
NNGGCGACACCTCNNN

MA0161.1_NFIC/Jaspar

Match Rank:3
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:AGCSAACACG
TGCCAA----

Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:4
Score:0.56
Offset:-7
Orientation:forward strand
Alignment:-------AGCSAACACG
NNNVCTGWGYAAACASN

PB0130.1_Gm397_2/Jaspar

Match Rank:5
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---AGCSAACACG---
AGCGGCACACACGCAA

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer

Match Rank:6
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---AGCSAACACG
GYCATCMATCAT-

MA0041.1_Foxd3/Jaspar

Match Rank:7
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-AGCSAACACG-
AAACAAACATTC

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:8
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--AGCSAACACG
AAAGTAAACA--

MF0005.1_Forkhead_class/Jaspar

Match Rank:9
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-AGCSAACACG
AAATAAACA--

POL010.1_DCE_S_III/Jaspar

Match Rank:10
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-AGCSAACACG
CAGCC------