Information for motif28


Reverse Opposite:

p-value:1e-3
log p-value:-8.147e+00
Information Content per bp:1.559
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif0.16%
Number of Background Sequences with motif16.9
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets334.7 +/- 285.2bp
Average Position of motif in Background372.6 +/- 325.1bp
Strand Bias (log2 ratio + to - strand density)-3.4
Multiplicity (# of sites on avg that occur together)1.77
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:1
Score:0.69
Offset:0
Orientation:forward strand
Alignment:TAGGACAGTCTG---
VAGRACAKNCTGTBC

GRE/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.65
Offset:0
Orientation:forward strand
Alignment:TAGGACAGTCTG---
VAGRACAKWCTGTYC

MA0113.2_NR3C1/Jaspar

Match Rank:3
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:TAGGACAGTCTG----
-AGNACATTNTGTTCT

MA0007.2_AR/Jaspar

Match Rank:4
Score:0.64
Offset:0
Orientation:forward strand
Alignment:TAGGACAGTCTG---
AAGAACAGAATGTTC

ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:5
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:TAGGACAGTCTG----
NAGAACAGNCTGTNCT

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.62
Offset:5
Orientation:forward strand
Alignment:TAGGACAGTCTG-
-----TWGTCTGV

GRE(NR/IR3)/A549-GR-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:TAGGACAGTCTG-----
-AGNACANNNTGTNCTN

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.59
Offset:5
Orientation:forward strand
Alignment:TAGGACAGTCTG-
-----CTGTCTGG

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.58
Offset:3
Orientation:forward strand
Alignment:TAGGACAGTCTG-
---VBSYGTCTGG

PB0063.1_Sox13_1/Jaspar

Match Rank:10
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--TAGGACAGTCTG--
TTAAGAACAATAAATT