Information for motif29


Reverse Opposite:

p-value:1e-3
log p-value:-7.396e+00
Information Content per bp:1.979
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.07%
Number of Background Sequences with motif4.9
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets207.3 +/- 113.8bp
Average Position of motif in Background397.3 +/- 313.9bp
Strand Bias (log2 ratio + to - strand density)1.4
Multiplicity (# of sites on avg that occur together)1.83
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0169.1_Tgif1/Jaspar

Match Rank:1
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----TGACAACTGGCT
GATATTGACAGCTGCGT

PH0170.1_Tgif2/Jaspar

Match Rank:2
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----TGACAACTGGCT
GTATTGACAGCTNNTT

PH0102.1_Meis1/Jaspar

Match Rank:3
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----TGACAACTGGCT
NTATTGACAGCTNNTT

MA0100.2_Myb/Jaspar

Match Rank:4
Score:0.62
Offset:2
Orientation:forward strand
Alignment:TGACAACTGGCT
--CCAACTGCCA

PH0140.1_Pknox1/Jaspar

Match Rank:5
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----TGACAACTGGCT
GGATTGACAGGTCNTT

Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer

Match Rank:6
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TGACAACTGGCT
VNAVCAGCTGGC-

PH0105.1_Meis3/Jaspar

Match Rank:7
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----TGACAACTGGCT
GTATTGACAGGTNNTT

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:8
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---TGACAACTGGCT--
CCNNACCATCTGGCCTN

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:9
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TGACAACTGGCT
TGACACCT----

MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer

Match Rank:10
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:TGACAACTGGCT
---YAACBGCC-