Information for motif3


Reverse Opposite:

p-value:1e-16
log p-value:-3.858e+01
Information Content per bp:1.853
Number of Target Sequences with motif1254.0
Percentage of Target Sequences with motif15.31%
Number of Background Sequences with motif3957.0
Percentage of Background Sequences with motif12.16%
Average Position of motif in Targets495.8 +/- 438.9bp
Average Position of motif in Background497.7 +/- 474.6bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.58
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0079.3_SP1/Jaspar

Match Rank:1
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GGAGGTTGAG-
GGGGGCGGGGC

MA0162.2_EGR1/Jaspar

Match Rank:2
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---GGAGGTTGAG-
GGCGGGGGCGGGGG

POL003.1_GC-box/Jaspar

Match Rank:3
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GGAGGTTGAG---
AGGGGGCGGGGCTG

MA0528.1_ZNF263/Jaspar

Match Rank:4
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---GGAGGTTGAG--------
GGAGGAGGAGGGGGAGGAGGA

MA0503.1_Nkx2-5_(var.2)/Jaspar

Match Rank:5
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:GGAGGTTGAG-----
----CTTGAGTGGCT

MA0516.1_SP2/Jaspar

Match Rank:6
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----GGAGGTTGAG-
GGGNGGGGGCGGGGC

GFY(?)/Promoter/Homer

Match Rank:7
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-GGAGGTTGAG-
GGGAATTGTAGT

MA0131.1_HINFP/Jaspar

Match Rank:8
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--GGAGGTTGAG
GCGGACGTTN--

MA0057.1_MZF1_5-13/Jaspar

Match Rank:9
Score:0.53
Offset:0
Orientation:forward strand
Alignment:GGAGGTTGAG
GGAGGGGGAA

ETS:RUNX/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer

Match Rank:10
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---GGAGGTTGAG
ACAGGATGTGGT-