Information for motif31


Reverse Opposite:

p-value:1e-2
log p-value:-6.696e+00
Information Content per bp:1.980
Number of Target Sequences with motif5827.0
Percentage of Target Sequences with motif71.16%
Number of Background Sequences with motif22656.5
Percentage of Background Sequences with motif69.62%
Average Position of motif in Targets460.4 +/- 423.9bp
Average Position of motif in Background477.4 +/- 435.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)2.55
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0025.1_Dmbx1/Jaspar

Match Rank:1
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--AACAGGATCAGT---
TGAACCGGATTAATGAA

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:2
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:AACAGGATCAGT
ANCAGGATGT--

MA0467.1_Crx/Jaspar

Match Rank:3
Score:0.63
Offset:0
Orientation:forward strand
Alignment:AACAGGATCAGT
AAGAGGATTAG-

MA0480.1_Foxo1/Jaspar

Match Rank:4
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----AACAGGATCAGT
TGTAAACAGGA-----

PH0126.1_Obox6/Jaspar

Match Rank:5
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--AACAGGATCAGT-
AAAAACGGATTATTG

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:6
Score:0.56
Offset:1
Orientation:forward strand
Alignment:AACAGGATCAGT
-CCAGGAACAG-

Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer

Match Rank:7
Score:0.55
Offset:0
Orientation:forward strand
Alignment:AACAGGATCAGT
AACAGGAAGT--

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:8
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:AACAGGATCAGT--
----DGATCRATAN

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:9
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:AACAGGATCAGT
----GGATTAGC

PB0141.1_Isgf3g_2/Jaspar

Match Rank:10
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----AACAGGATCAGT
GCAAAACATTACTA--