Information for motif34


Reverse Opposite:

p-value:1e-2
log p-value:-5.826e+00
Information Content per bp:1.530
Number of Target Sequences with motif6499.0
Percentage of Target Sequences with motif79.36%
Number of Background Sequences with motif25418.9
Percentage of Background Sequences with motif78.11%
Average Position of motif in Targets518.9 +/- 461.5bp
Average Position of motif in Background524.6 +/- 474.1bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)3.55
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0045.1_Myb_1/Jaspar

Match Rank:1
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----GAACCGTGGT---
ATGGAAACCGTTATTTT

PB0046.1_Mybl1_1/Jaspar

Match Rank:2
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GAACCGTGGT---
TTGAAAACCGTTAATTT

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:3
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:GAACCGTGGT---
---CTGTGGTTTN

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer

Match Rank:4
Score:0.59
Offset:2
Orientation:forward strand
Alignment:GAACCGTGGT--
--GCTGTGGTTT

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:5
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GAACCGTGGT---
-NNHTGTGGTTWN

MA0130.1_ZNF354C/Jaspar

Match Rank:6
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:GAACCGTGGT-
-----GTGGAT

PB0196.1_Zbtb7b_2/Jaspar

Match Rank:7
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GAACCGTGGT------
NNANTGGTGGTCTTNNN

GFY(?)/Promoter/Homer

Match Rank:8
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--GAACCGTGGT
GGGAATTGTAGT

MA0077.1_SOX9/Jaspar

Match Rank:9
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GAACCGTGGT
GAACAATGG-

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:10
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:GAACCGTGGT--
--NNTGTGGTTT