Information for motif36


Reverse Opposite:

p-value:1e-1
log p-value:-3.551e+00
Information Content per bp:1.936
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif0.29%
Number of Background Sequences with motif62.2
Percentage of Background Sequences with motif0.19%
Average Position of motif in Targets319.9 +/- 282.1bp
Average Position of motif in Background529.8 +/- 502.9bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.57
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0526.1_USF2/Jaspar

Match Rank:1
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--CAGGTGACTA
GTCATGTGACC-

E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:2
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--CAGGTGACTA
NNCAGGTGNN--

MA0093.2_USF1/Jaspar

Match Rank:3
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--CAGGTGACTA
GCCACGTGACC-

MA0103.2_ZEB1/Jaspar

Match Rank:4
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:CAGGTGACTA
CAGGTGAGG-

Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer

Match Rank:5
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--CAGGTGACTA
ACCACGTGAC--

NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer

Match Rank:6
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CAGGTGACTA
KCCACGTGAC--

PB0007.1_Bhlhb2_1/Jaspar

Match Rank:7
Score:0.65
Offset:-8
Orientation:forward strand
Alignment:--------CAGGTGACTA----
GGAAGAGTCACGTGACCAATAC

USF1(HLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CAGGTGACTA
TCACGTGACC-

PB0089.1_Tcfe2a_1/Jaspar

Match Rank:9
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----CAGGTGACTA--
ATCCACAGGTGCGAAAA

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:10
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CAGGTGACTA-
CAGGTAAGTAT