Information for motif38


Reverse Opposite:

p-value:1e0
log p-value:-1.709e+00
Information Content per bp:1.969
Number of Target Sequences with motif111.0
Percentage of Target Sequences with motif1.36%
Number of Background Sequences with motif403.7
Percentage of Background Sequences with motif1.24%
Average Position of motif in Targets351.6 +/- 289.2bp
Average Position of motif in Background476.2 +/- 426.8bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0161.1_NFIC/Jaspar

Match Rank:1
Score:0.66
Offset:4
Orientation:forward strand
Alignment:GATCTTGGCT
----TTGGCA

MA0592.1_ESRRA/Jaspar

Match Rank:2
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---GATCTTGGCT
NGTGACCTTGG--

PB0014.1_Esrra_1/Jaspar

Match Rank:3
Score:0.64
Offset:-6
Orientation:reverse strand
Alignment:------GATCTTGGCT-
NNNNATGACCTTGANTN

MA0029.1_Mecom/Jaspar

Match Rank:4
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---GATCTTGGCT-
TNTTATCTTATCTT

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:5
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GATCTTGGCT
TGACCTTGAV-

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:6
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GATCTTGGCT
TGACCTTGAN-

MA0141.2_Esrrb/Jaspar

Match Rank:7
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GATCTTGGCT-
TGACCTTGANNN

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:8
Score:0.58
Offset:4
Orientation:forward strand
Alignment:GATCTTGGCT--
----TWGTCTGV

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GATCTTGGCT
NTGACCTTGA--

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GATCTTGGCT
CTGACCTTTG--