Information for motif39


Reverse Opposite:

p-value:1e0
log p-value:-9.747e-01
Information Content per bp:1.954
Number of Target Sequences with motif25.0
Percentage of Target Sequences with motif0.31%
Number of Background Sequences with motif92.0
Percentage of Background Sequences with motif0.28%
Average Position of motif in Targets526.0 +/- 359.6bp
Average Position of motif in Background656.8 +/- 414.3bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:1
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CCCAGCACCG--
CCGCATAGCAACGGA

PB0055.1_Rfx4_1/Jaspar

Match Rank:2
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---CCCAGCACCG--
TACCATAGCAACGGT

POL013.1_MED-1/Jaspar

Match Rank:3
Score:0.59
Offset:4
Orientation:forward strand
Alignment:CCCAGCACCG
----GCTCCG

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CCCAGCACCG-
SCCTAGCAACAG

PB0054.1_Rfx3_1/Jaspar

Match Rank:5
Score:0.57
Offset:-7
Orientation:forward strand
Alignment:-------CCCAGCACCG------
TGTGACCCTTAGCAACCGATTAA

Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CCCAGCACCG--
CACAGCAGGGGG

Sp1(Zf)/Promoter/Homer

Match Rank:7
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CCCAGCACCG
GGCCCCGCCCCC

POL010.1_DCE_S_III/Jaspar

Match Rank:8
Score:0.56
Offset:2
Orientation:forward strand
Alignment:CCCAGCACCG
--CAGCC---

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:9
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CCCAGCACCG
CCAGGAACAG

MA0144.2_STAT3/Jaspar

Match Rank:10
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---CCCAGCACCG
TTTCCCAGAAN--