Information for motif4


Reverse Opposite:

p-value:1e-15
log p-value:-3.577e+01
Information Content per bp:1.561
Number of Target Sequences with motif858.0
Percentage of Target Sequences with motif10.48%
Number of Background Sequences with motif2586.4
Percentage of Background Sequences with motif7.95%
Average Position of motif in Targets459.2 +/- 403.7bp
Average Position of motif in Background492.3 +/- 457.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.24
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0522.1_Tcf3/Jaspar

Match Rank:1
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CCCADCTACT-
CACAGCTGCAG

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:2
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CCCADCTACT
GCCATCTGTT

MA0132.1_Pdx1/Jaspar

Match Rank:3
Score:0.55
Offset:5
Orientation:forward strand
Alignment:CCCADCTACT-
-----CTAATT

Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CCCADCTACT-
-NCAGCTGCTG

MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer

Match Rank:5
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CCCADCTACT
--CAGCTGTT

MF0010.1_Homeobox_class/Jaspar

Match Rank:6
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:CCCADCTACT
---AATTATT

MA0521.1_Tcf12/Jaspar

Match Rank:7
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-CCCADCTACT
NNGCAGCTGTT

MA0500.1_Myog/Jaspar

Match Rank:8
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-CCCADCTACT
NNGCAGCTGTC

MA0009.1_T/Jaspar

Match Rank:9
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--CCCADCTACT
TTCACACCTAG-

Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer

Match Rank:10
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:CCCADCTACT-
-ACAGCTGTTV