Information for motif8


Reverse Opposite:

p-value:1e-13
log p-value:-3.119e+01
Information Content per bp:1.698
Number of Target Sequences with motif1309.0
Percentage of Target Sequences with motif15.98%
Number of Background Sequences with motif4262.7
Percentage of Background Sequences with motif13.10%
Average Position of motif in Targets473.6 +/- 432.1bp
Average Position of motif in Background478.5 +/- 456.2bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.40
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:1
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:TGGGATTACAGA
NGGGATTA----

PH0137.1_Pitx1/Jaspar

Match Rank:2
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----TGGGATTACAGA-
TTAGAGGGATTAACAAT

MA0019.1_Ddit3::Cebpa/Jaspar

Match Rank:3
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:TGGGATTACAGA-
-GGGATTGCATNN

PH0035.1_Gsc/Jaspar

Match Rank:4
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---TGGGATTACAGA--
NNAAGGGATTAACGANT

PH0122.1_Obox2/Jaspar

Match Rank:5
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----TGGGATTACAGA-
TGAGGGGGATTAACTAT

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:6
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:TGGGATTACAGA
--GGATTAGC--

PH0121.1_Obox1/Jaspar

Match Rank:7
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----TGGGATTACAGA-
TTAAGGGGATTAACTAC

PH0126.1_Obox6/Jaspar

Match Rank:8
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----TGGGATTACAGA
AAAAACGGATTATTG-

PH0123.1_Obox3/Jaspar

Match Rank:9
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----TGGGATTACAGA-
TGAGGGGGATTAACTAT

PH0125.1_Obox5_2/Jaspar

Match Rank:10
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---TGGGATTACAGA--
NANAGGGATTAATTATN