Information for motif9


Reverse Opposite:

p-value:1e-13
log p-value:-3.106e+01
Information Content per bp:1.858
Number of Target Sequences with motif1913.0
Percentage of Target Sequences with motif23.36%
Number of Background Sequences with motif6501.4
Percentage of Background Sequences with motif19.98%
Average Position of motif in Targets483.0 +/- 457.1bp
Average Position of motif in Background483.1 +/- 484.3bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.32
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL009.1_DCE_S_II/Jaspar

Match Rank:1
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:GACAGAGT
CACAGN--

MA0498.1_Meis1/Jaspar

Match Rank:2
Score:0.64
Offset:-8
Orientation:reverse strand
Alignment:--------GACAGAGT
NNNTGAGTGACAGCT-

MA0442.1_SOX10/Jaspar

Match Rank:3
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GACAGAGT
-ACAAAG-

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---GACAGAGT
CCAGACAG---

PH0169.1_Tgif1/Jaspar

Match Rank:5
Score:0.59
Offset:-6
Orientation:forward strand
Alignment:------GACAGAGT---
GATATTGACAGCTGCGT

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:6
Score:0.58
Offset:-6
Orientation:forward strand
Alignment:------GACAGAGT
GGTGYTGACAGS--

PH0105.1_Meis3/Jaspar

Match Rank:7
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----GACAGAGT---
GTATTGACAGGTNNTT

PH0141.1_Pknox2/Jaspar

Match Rank:8
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----GACAGAGT---
NNATTGACAGGTGCTT

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.56
Offset:-6
Orientation:reverse strand
Alignment:------GACAGAGT
NTGATTGACAGN--

PH0102.1_Meis1/Jaspar

Match Rank:10
Score:0.55
Offset:-5
Orientation:reverse strand
Alignment:-----GACAGAGT---
NTATTGACAGCTNNTT