Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 8229)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 32328)	% of Background Sequences with Motif
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e-3	-8.266e+00	0.0633	79.0	0.96%	206.9	0.64%
PAX5(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-3	-7.546e+00	0.0650	919.0	11.22%	3290.8	10.11%
Pax8(Paired/Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-3	-7.337e+00	0.0650	858.0	10.48%	3065.9	9.42%
OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-2	-5.267e+00	0.3172	444.0	5.42%	1562.2	4.80%
ETS:E-box/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-2	-5.130e+00	0.3172	248.0	3.03%	837.4	2.57%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-1	-3.932e+00	0.8038	3503.0	42.78%	13553.8	41.65%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-1	-3.846e+00	0.8038	1403.0	17.13%	5303.1	16.30%
TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-1	-3.834e+00	0.8038	222.0	2.71%	769.0	2.36%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-1	-3.808e+00	0.8038	2271.0	27.73%	8702.5	26.74%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-1	-3.754e+00	0.8038	232.0	2.83%	807.4	2.48%
Pax7-long(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e-1	-3.655e+00	0.8038	59.0	0.72%	179.8	0.55%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-1	-3.592e+00	0.8038	147.0	1.80%	496.4	1.53%
GFY-Staf/Promoters/Homer	RACTACAATTCCCAGAAKGC	1e-1	-3.449e+00	0.8038	106.0	1.29%	349.5	1.07%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-1	-3.357e+00	0.8038	211.0	2.58%	738.3	2.27%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-1	-3.340e+00	0.8038	166.0	2.03%	571.3	1.76%
GATA-DR8(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-1	-3.147e+00	0.8038	170.0	2.08%	590.4	1.81%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-1	-3.131e+00	0.8038	499.0	6.09%	1838.1	5.65%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-1	-3.068e+00	0.8038	386.0	4.71%	1408.9	4.33%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-1	-3.060e+00	0.8038	237.0	2.89%	843.7	2.59%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-1	-3.049e+00	0.8038	1215.0	14.84%	4616.4	14.19%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-1	-3.013e+00	0.8038	1237.0	15.11%	4704.4	14.46%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-1	-2.978e+00	0.8038	899.0	10.98%	3390.4	10.42%
Srebp2(HLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-1	-2.975e+00	0.8038	393.0	4.80%	1438.9	4.42%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-1	-2.882e+00	0.8038	531.0	6.48%	1971.4	6.06%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-1	-2.826e+00	0.8038	277.0	3.38%	1001.9	3.08%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529/Homer	CYAAAAATAG	1e-1	-2.779e+00	0.8038	1232.0	15.04%	4699.7	14.44%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-1	-2.758e+00	0.8038	166.0	2.03%	584.2	1.80%
bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-1	-2.700e+00	0.8038	640.0	7.82%	2400.1	7.38%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-1	-2.689e+00	0.8038	1331.0	16.25%	5092.6	15.65%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-1	-2.678e+00	0.8038	1008.0	12.31%	3832.0	11.77%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-1	-2.662e+00	0.8038	735.0	8.98%	2770.3	8.51%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e-1	-2.629e+00	0.8038	1391.0	16.99%	5331.2	16.38%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-1	-2.617e+00	0.8038	889.0	10.86%	3371.1	10.36%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-1	-2.606e+00	0.8038	3671.0	44.83%	14328.8	44.03%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-1	-2.564e+00	0.8038	3580.0	43.72%	13971.7	42.93%
NFkB-p65-Rel(RHD)/LPS-exp(GSE23622)/Homer	GGAAATTCCC	1e-1	-2.504e+00	0.8038	189.0	2.31%	677.7	2.08%
Srebp1a(HLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-1	-2.472e+00	0.8038	586.0	7.16%	2202.1	6.77%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e-1	-2.347e+00	0.8038	3768.0	46.01%	14738.4	45.29%
NFkB-p50,p52(RHD)/p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e-1	-2.327e+00	0.8038	279.0	3.41%	1025.7	3.15%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-2.294e+00	0.8038	1795.0	21.92%	6943.3	21.34%
GATA:SCL/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-2.287e+00	0.8038	264.0	3.22%	969.9	2.98%
GATA-DR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-2.263e+00	0.8038	198.0	2.42%	718.3	2.21%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-2.234e+00	0.8038	612.0	7.47%	2315.0	7.11%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-2.230e+00	0.8038	3584.0	43.77%	14020.4	43.08%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-2.224e+00	0.8038	1626.0	19.86%	6284.5	19.31%
CLOCK(HLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-2.222e+00	0.8038	1183.0	14.45%	4545.9	13.97%
Egr2/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-2.199e+00	0.8038	417.0	5.09%	1561.2	4.80%
PRDM1/BMI1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-2.145e+00	0.8038	1217.0	14.86%	4684.2	14.39%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-2.142e+00	0.8038	1979.0	24.17%	7681.4	23.60%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-2.086e+00	0.8038	1636.0	19.98%	6335.9	19.47%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-2.082e+00	0.8038	1348.0	16.46%	5203.7	15.99%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-2.022e+00	0.8038	1807.0	22.07%	7014.7	21.55%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-1.960e+00	0.8038	340.0	4.15%	1275.0	3.92%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-1.955e+00	0.8038	1281.0	15.64%	4950.0	15.21%
LXRE(NR/DR4)/BLRP(RAW)-LXRb-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-1.948e+00	0.8038	234.0	2.86%	866.1	2.66%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-1.906e+00	0.8038	3130.0	38.22%	12255.1	37.66%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-1.884e+00	0.8038	4196.0	51.24%	16488.3	50.66%
E-box(HLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-1.808e+00	0.8038	190.0	2.32%	702.8	2.16%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-1.804e+00	0.8038	2689.0	32.84%	10520.8	32.33%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-1.783e+00	0.8038	480.0	5.86%	1826.8	5.61%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-1.709e+00	0.8038	2314.0	28.26%	9047.2	27.80%
FOXA1:AR/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-1.709e+00	0.8038	193.0	2.36%	717.3	2.20%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-1.673e+00	0.8038	890.0	10.87%	3437.3	10.56%
NRF1/Promoter/Homer	STGCGCATGCGC	1e0	-1.615e+00	0.8038	272.0	3.32%	1026.3	3.15%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e0	-1.613e+00	0.8038	1027.0	12.54%	3980.2	12.23%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-1.608e+00	0.8038	1556.0	19.00%	6064.7	18.64%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-1.512e+00	0.8096	2675.0	32.67%	10499.9	32.26%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-1.494e+00	0.8123	31.0	0.38%	106.1	0.33%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-1.492e+00	0.8123	2767.0	33.79%	10866.7	33.39%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-1.491e+00	0.8123	2850.0	34.80%	11195.2	34.40%
Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-1.466e+00	0.8123	1103.0	13.47%	4292.9	13.19%
ERE(NR/IR3)/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-1.439e+00	0.8123	569.0	6.95%	2195.0	6.74%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-1.427e+00	0.8123	288.0	3.52%	1097.8	3.37%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-1.393e+00	0.8252	2272.0	27.74%	8918.3	27.40%
MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-1.370e+00	0.8335	2150.0	26.25%	8438.4	25.93%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-1.354e+00	0.8355	2149.0	26.24%	8436.4	25.92%
Mouse_Recombination_Hotspot/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.338e+00	0.8379	147.0	1.80%	553.5	1.70%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e0	-1.306e+00	0.8543	229.0	2.80%	873.2	2.68%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e0	-1.297e+00	0.8543	1735.0	21.19%	6805.3	20.91%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-1.271e+00	0.8626	4289.0	52.38%	16938.3	52.05%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-1.193e+00	0.9216	2533.0	30.93%	9979.2	30.66%
ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-1.182e+00	0.9216	3177.0	38.80%	12535.2	38.52%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-1.172e+00	0.9216	1005.0	12.27%	3934.5	12.09%
MyoD(HLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-1.124e+00	0.9515	1703.0	20.80%	6700.3	20.59%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-1.119e+00	0.9515	80.0	0.98%	301.7	0.93%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-1.114e+00	0.9515	4194.0	51.22%	16586.0	50.96%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-1.084e+00	0.9560	2776.0	33.90%	10959.7	33.68%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-1.078e+00	0.9560	1270.0	15.51%	4992.2	15.34%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-1.070e+00	0.9560	370.0	4.52%	1439.5	4.42%
VDR(NR/DR3)/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-1.059e+00	0.9560	414.0	5.06%	1613.7	4.96%
HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-1.047e+00	0.9560	905.0	11.05%	3552.4	10.92%
CEBP(bZIP)/CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-1.024e+00	0.9607	1800.0	21.98%	7098.9	21.81%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-9.870e-01	0.9858	2094.0	25.57%	8269.2	25.41%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-9.842e-01	0.9858	2285.0	27.90%	9027.6	27.74%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-9.767e-01	0.9858	3757.0	45.88%	14872.5	45.70%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-9.628e-01	0.9858	705.0	8.61%	2770.9	8.51%
c-Myc(HLH)/LNCAP-cMyc-ChIP-Seq(unpublished)/Homer	VCCACGTG	1e0	-9.521e-01	0.9858	867.0	10.59%	3412.1	10.48%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-9.496e-01	0.9858	1882.0	22.98%	7434.1	22.84%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-8.967e-01	1.0000	193.0	2.36%	753.7	2.32%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-8.967e-01	1.0000	193.0	2.36%	753.7	2.32%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-8.639e-01	1.0000	817.0	9.98%	3224.8	9.91%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-8.634e-01	1.0000	740.0	9.04%	2919.7	8.97%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-8.556e-01	1.0000	1036.0	12.65%	4093.4	12.58%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-8.093e-01	1.0000	2376.0	29.01%	9418.3	28.94%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-8.034e-01	1.0000	428.0	5.23%	1689.6	5.19%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-8.013e-01	1.0000	2151.0	26.27%	8526.4	26.20%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-8.004e-01	1.0000	1489.0	18.18%	5899.0	18.13%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-7.962e-01	1.0000	642.0	7.84%	2538.5	7.80%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-7.917e-01	1.0000	457.0	5.58%	1805.3	5.55%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-7.849e-01	1.0000	709.0	8.66%	2805.8	8.62%
E2A(HLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-7.833e-01	1.0000	2690.0	32.85%	10670.3	32.79%
Reverb(NR/DR2)/BLRP(RAW)-Reverba-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-7.690e-01	1.0000	346.0	4.23%	1367.3	4.20%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e0	-7.574e-01	1.0000	1178.0	14.39%	4670.7	14.35%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-7.334e-01	1.0000	2985.0	36.45%	11853.0	36.42%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-7.328e-01	1.0000	480.0	5.86%	1902.0	5.84%
bZIP:IRF/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-7.232e-01	1.0000	1076.0	13.14%	4270.4	13.12%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-7.129e-01	1.0000	1279.0	15.62%	5078.8	15.61%
TRa(NR)/C17.2-TRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-7.016e-01	1.0000	1047.0	12.79%	4158.8	12.78%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-6.993e-01	1.0000	2423.0	29.59%	9626.8	29.58%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-6.919e-01	1.0000	2290.0	27.96%	9099.5	27.96%
Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-6.857e-01	1.0000	318.0	3.88%	1263.0	3.88%
BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer	NHAACBGYYV	1e0	-6.777e-01	1.0000	2751.0	33.59%	10934.7	33.60%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-6.617e-01	1.0000	1741.0	21.26%	6923.9	21.28%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-6.596e-01	1.0000	4597.0	56.14%	18275.0	56.15%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-6.593e-01	1.0000	601.0	7.34%	2391.7	7.35%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-6.212e-01	1.0000	587.0	7.17%	2340.4	7.19%
USF1(HLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-6.100e-01	1.0000	1016.0	12.41%	4049.5	12.44%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-6.079e-01	1.0000	732.0	8.94%	2919.0	8.97%
n-Myc(HLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-6.062e-01	1.0000	1377.0	16.82%	5486.9	16.86%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-5.934e-01	1.0000	359.0	4.38%	1435.1	4.41%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-5.850e-01	1.0000	916.0	11.19%	3655.9	11.23%
CHR/Cell-Cycle-Exp/Homer	SRGTTTCAAA	1e0	-5.811e-01	1.0000	1412.0	17.24%	5631.0	17.30%
Ptf1a(HLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-5.799e-01	1.0000	4271.0	52.16%	16998.1	52.23%
PAX5-shortForm(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-5.733e-01	1.0000	260.0	3.17%	1042.9	3.20%
FXR(NR/IR1)/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e0	-5.693e-01	1.0000	830.0	10.14%	3315.1	10.19%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-5.673e-01	1.0000	1595.0	19.48%	6361.6	19.55%
Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-5.556e-01	1.0000	705.0	8.61%	2820.0	8.67%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-5.396e-01	1.0000	3104.0	37.90%	12370.0	38.01%
Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-5.359e-01	1.0000	388.0	4.74%	1557.7	4.79%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-5.340e-01	1.0000	1014.0	12.38%	4054.4	12.46%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-5.227e-01	1.0000	791.0	9.66%	3167.8	9.73%
PAX3:FKHR-fusion(Paired/Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-5.202e-01	1.0000	529.0	6.46%	2122.9	6.52%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-5.081e-01	1.0000	827.0	10.10%	3313.6	10.18%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-5.079e-01	1.0000	1691.0	20.65%	6756.3	20.76%
SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-5.075e-01	1.0000	5835.0	71.25%	23228.2	71.37%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-5.030e-01	1.0000	1137.0	13.88%	4550.3	13.98%
ISRE(IRF)/ThioMac-LPS-exp(GSE23622)/HOMER	AGTTTCASTTTC	1e0	-4.900e-01	1.0000	171.0	2.09%	693.9	2.13%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-4.837e-01	1.0000	733.0	8.95%	2942.2	9.04%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-4.828e-01	1.0000	2810.0	34.31%	11216.3	34.47%
E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-4.822e-01	1.0000	2290.0	27.96%	9147.9	28.11%
Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-4.746e-01	1.0000	805.0	9.83%	3231.9	9.93%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-4.581e-01	1.0000	3955.0	48.30%	15776.5	48.48%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-4.547e-01	1.0000	2414.0	29.48%	9649.0	29.65%
Max(HLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-4.341e-01	1.0000	1359.0	16.60%	5450.2	16.75%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-4.230e-01	1.0000	4891.0	59.73%	19505.4	59.94%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-4.129e-01	1.0000	2121.0	25.90%	8493.2	26.10%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-3.948e-01	1.0000	3425.0	41.82%	13689.5	42.06%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-3.763e-01	1.0000	2765.0	33.76%	11069.7	34.01%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-3.754e-01	1.0000	15.0	0.18%	66.9	0.21%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-3.724e-01	1.0000	285.0	3.48%	1164.3	3.58%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-3.632e-01	1.0000	5170.0	63.13%	20632.1	63.40%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-3.613e-01	1.0000	485.0	5.92%	1970.1	6.05%
Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-3.543e-01	1.0000	2562.0	31.29%	10268.1	31.55%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-3.539e-01	1.0000	707.0	8.63%	2862.7	8.80%
GATA-IR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-3.504e-01	1.0000	168.0	2.05%	694.0	2.13%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-3.472e-01	1.0000	2043.0	24.95%	8202.9	25.21%
c-Myc/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-3.425e-01	1.0000	1033.0	12.61%	4170.5	12.81%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-3.304e-01	1.0000	4480.0	54.71%	17905.8	55.02%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-3.271e-01	1.0000	1910.0	23.32%	7678.1	23.59%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-3.111e-01	1.0000	31.0	0.38%	136.6	0.42%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-3.092e-01	1.0000	207.0	2.53%	857.1	2.63%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-3.081e-01	1.0000	308.0	3.76%	1266.2	3.89%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-2.753e-01	1.0000	2509.0	30.64%	10086.9	30.99%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-2.620e-01	1.0000	277.0	3.38%	1148.0	3.53%
GRE(NR/IR3)/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-2.513e-01	1.0000	248.0	3.03%	1033.0	3.17%
BMAL1(HLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-2.407e-01	1.0000	3265.0	39.87%	13113.9	40.30%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-2.390e-01	1.0000	2845.0	34.74%	11441.6	35.16%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-2.327e-01	1.0000	994.0	12.14%	4045.2	12.43%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-2.296e-01	1.0000	470.0	5.74%	1936.3	5.95%
Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-2.291e-01	1.0000	2044.0	24.96%	8250.1	25.35%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-2.235e-01	1.0000	459.0	5.61%	1893.8	5.82%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-2.211e-01	1.0000	2139.0	26.12%	8633.2	26.53%
GATA-IR3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-2.208e-01	1.0000	424.0	5.18%	1752.5	5.39%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-2.125e-01	1.0000	3615.0	44.14%	14520.3	44.62%
GRE/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-2.018e-01	1.0000	450.0	5.50%	1862.6	5.72%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-2.010e-01	1.0000	285.0	3.48%	1192.6	3.66%
Pax7(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-1.840e-01	1.0000	191.0	2.33%	811.7	2.49%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-1.596e-01	1.0000	1420.0	17.34%	5785.4	17.78%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-1.592e-01	1.0000	1946.0	23.76%	7893.9	24.26%
Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-1.540e-01	1.0000	1359.0	16.60%	5543.7	17.03%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-1.487e-01	1.0000	1515.0	18.50%	6172.3	18.97%
NFAT:AP1/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-1.467e-01	1.0000	494.0	6.03%	2057.5	6.32%
GLI3(Zf)/GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-1.459e-01	1.0000	235.0	2.87%	1000.1	3.07%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-1.454e-01	1.0000	1894.0	23.13%	7693.1	23.64%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-1.379e-01	1.0000	999.0	12.20%	4103.6	12.61%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-1.371e-01	1.0000	41.0	0.50%	192.7	0.59%
E2F(E2F)/Cell-Cycle-Exp/Homer	TTSGCGCGAAAA	1e0	-1.310e-01	1.0000	83.0	1.01%	372.1	1.14%
T1ISRE(IRF)/Ifnb-Exp/Homer	ACTTTCGTTTCT	1e0	-1.295e-01	1.0000	21.0	0.26%	105.5	0.32%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-1.268e-01	1.0000	1910.0	23.32%	7769.1	23.87%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-1.228e-01	1.0000	5737.0	70.06%	22994.0	70.66%
Pax7-longest(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-1.226e-01	1.0000	65.0	0.79%	297.2	0.91%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-1.223e-01	1.0000	2762.0	33.73%	11179.8	34.35%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-1.195e-01	1.0000	1245.0	15.20%	5104.4	15.68%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-1.111e-01	1.0000	1314.0	16.05%	5387.7	16.56%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-9.752e-02	1.0000	3541.0	43.24%	14306.6	43.96%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-9.695e-02	1.0000	340.0	4.15%	1447.1	4.45%
HIF2a(HLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-8.494e-02	1.0000	658.0	8.04%	2753.0	8.46%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-8.186e-02	1.0000	3090.0	37.73%	12525.5	38.49%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-8.131e-02	1.0000	1374.0	16.78%	5651.4	17.37%
NF1:FOXA1/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-8.113e-02	1.0000	114.0	1.39%	514.9	1.58%
PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-7.805e-02	1.0000	1778.0	21.71%	7279.1	22.37%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-7.772e-02	1.0000	875.0	10.69%	3638.5	11.18%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e0	-7.741e-02	1.0000	633.0	7.73%	2655.9	8.16%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-7.735e-02	1.0000	1862.0	22.74%	7617.3	23.41%
Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-7.552e-02	1.0000	2143.0	26.17%	8747.0	26.88%
HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-6.745e-02	1.0000	475.0	5.80%	2016.1	6.20%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-6.677e-02	1.0000	151.0	1.84%	675.6	2.08%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-5.681e-02	1.0000	1703.0	20.80%	7001.3	21.51%
ETS:RUNX/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-5.669e-02	1.0000	262.0	3.20%	1144.5	3.52%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-5.364e-02	1.0000	441.0	5.39%	1886.9	5.80%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-5.077e-02	1.0000	1790.0	21.86%	7359.7	22.61%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-4.351e-02	1.0000	2177.0	26.58%	8925.7	27.43%
CTCF-SatelliteElement/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-4.345e-02	1.0000	37.0	0.45%	191.6	0.59%
RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-4.239e-02	1.0000	2049.0	25.02%	8413.0	25.85%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-3.617e-02	1.0000	502.0	6.13%	2153.7	6.62%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-3.596e-02	1.0000	2860.0	34.92%	11675.1	35.87%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e0	-3.551e-02	1.0000	1879.0	22.95%	7742.7	23.79%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-3.491e-02	1.0000	1221.0	14.91%	5087.7	15.63%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-3.307e-02	1.0000	3151.0	38.48%	12844.6	39.47%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-2.930e-02	1.0000	3037.0	37.09%	12398.7	38.10%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-2.930e-02	1.0000	897.0	10.95%	3780.8	11.62%
NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-2.675e-02	1.0000	2091.0	25.53%	8614.3	26.47%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-2.139e-02	1.0000	2688.0	32.82%	11025.1	33.88%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-1.564e-02	1.0000	319.0	3.90%	1422.8	4.37%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-1.344e-02	1.0000	1109.0	13.54%	4683.1	14.39%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-1.132e-02	1.0000	1143.0	13.96%	4830.4	14.84%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-1.025e-02	1.0000	3545.0	43.29%	14500.3	44.56%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-8.887e-03	1.0000	5570.0	68.02%	22528.6	69.23%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-6.849e-03	1.0000	1054.0	12.87%	4490.6	13.80%
RBPJ:Ebox/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-4.971e-03	1.0000	659.0	8.05%	2877.8	8.84%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-4.953e-03	1.0000	1690.0	20.64%	7095.8	21.80%
STAT6/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-4.489e-03	1.0000	1133.0	13.84%	4832.7	14.85%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-3.637e-03	1.0000	3100.0	37.86%	12788.8	39.30%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-5.820e-04	1.0000	1321.0	16.13%	5687.6	17.48%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	0.000e+00	1.0000	722.0	8.82%	4234.7	13.01%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	0.000e+00	1.0000	598.0	7.30%	3654.9	11.23%