Information for motif11


Reverse Opposite:

p-value:1e-11
log p-value:-2.685e+01
Information Content per bp:1.831
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif0.35%
Number of Background Sequences with motif12.1
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets393.0 +/- 364.9bp
Average Position of motif in Background804.7 +/- 792.9bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0123.1_Obox3/Jaspar

Match Rank:1
Score:0.68
Offset:-6
Orientation:forward strand
Alignment:------CGAATAACTA-
TGAGGGGGATTAACTAT

PH0035.1_Gsc/Jaspar

Match Rank:2
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----CGAATAACTA--
NNAAGGGATTAACGANT

PH0125.1_Obox5_2/Jaspar

Match Rank:3
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----CGAATAACTA--
NANAGGGATTAATTATN

PH0122.1_Obox2/Jaspar

Match Rank:4
Score:0.65
Offset:-6
Orientation:forward strand
Alignment:------CGAATAACTA-
TGAGGGGGATTAACTAT

PH0137.1_Pitx1/Jaspar

Match Rank:5
Score:0.64
Offset:-6
Orientation:forward strand
Alignment:------CGAATAACTA-
TTAGAGGGATTAACAAT

PH0121.1_Obox1/Jaspar

Match Rank:6
Score:0.64
Offset:-6
Orientation:forward strand
Alignment:------CGAATAACTA-
TTAAGGGGATTAACTAC

PH0139.1_Pitx3/Jaspar

Match Rank:7
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----CGAATAACTA--
AGGGGGATTAGCTGCC

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:8
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CGAATAACTA
GGATTAGC--

PB0119.1_Foxa2_2/Jaspar

Match Rank:9
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CGAATAACTA----
AAAAATAACAAACGG

PH0124.1_Obox5_1/Jaspar

Match Rank:10
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----CGAATAACTA--
TAGAGGGATTAAATTTC