Information for motif17


Reverse Opposite:

p-value:1e-9
log p-value:-2.253e+01
Information Content per bp:1.530
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif0.23%
Number of Background Sequences with motif6.9
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets383.3 +/- 367.0bp
Average Position of motif in Background607.0 +/- 323.4bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0167.1_Tcf1/Jaspar

Match Rank:1
Score:0.70
Offset:-7
Orientation:forward strand
Alignment:-------TAACTAATGT
CCTTAGTTAACTAAAAT

PH0040.1_Hmbox1/Jaspar

Match Rank:2
Score:0.69
Offset:-5
Orientation:reverse strand
Alignment:-----TAACTAATGT--
GANGTTAACTAGTTTNN

PH0011.1_Alx1_2/Jaspar

Match Rank:3
Score:0.68
Offset:-6
Orientation:reverse strand
Alignment:------TAACTAATGT-
NNNAATTAATTAANGNG

MA0132.1_Pdx1/Jaspar

Match Rank:4
Score:0.68
Offset:3
Orientation:forward strand
Alignment:TAACTAATGT
---CTAATT-

PH0135.1_Phox2a/Jaspar

Match Rank:5
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----TAACTAATGT--
NNACTAATTAATNNNN

PH0062.1_Hoxb7/Jaspar

Match Rank:6
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----TAACTAATGT--
GTAGTAATTAATGCAA

MA0135.1_Lhx3/Jaspar

Match Rank:7
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---TAACTAATGT
GATTAATTAATTT

PAX3:FKHR-fusion(Paired/Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:8
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----TAACTAATGT-
ACCGTGACTAATTNN

PB0081.1_Tcf1_1/Jaspar

Match Rank:9
Score:0.67
Offset:-7
Orientation:forward strand
Alignment:-------TAACTAATGT
ACTTAGTTAACTAAAAA

PH0118.1_Nkx6-1_1/Jaspar

Match Rank:10
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----TAACTAATGT--
CNNAGTAATTAATTNNC