Information for motif18


Reverse Opposite:

p-value:1e-9
log p-value:-2.174e+01
Information Content per bp:1.530
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif0.15%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets306.8 +/- 263.6bp
Average Position of motif in Background563.4 +/- 333.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-AACCATGGGT
GAACAATGGN-

MA0077.1_SOX9/Jaspar

Match Rank:2
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-AACCATGGGT
GAACAATGG--

MA0116.1_Zfp423/Jaspar

Match Rank:3
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--AACCATGGGT---
GCACCCCTGGGTGCC

MA0143.3_Sox2/Jaspar

Match Rank:4
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:AACCATGGGT
AACAAAGG--

MA0515.1_Sox6/Jaspar

Match Rank:5
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--AACCATGGGT
AAAACAATGG--

PB0159.1_Rfx4_2/Jaspar

Match Rank:6
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----AACCATGGGT
NNNGTAACTANGNNA

PB0070.1_Sox30_1/Jaspar

Match Rank:7
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----AACCATGGGT--
AATGAACAATGGAATT

MA0058.2_MAX/Jaspar

Match Rank:8
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:AACCATGGGT--
--CCATGTGCTT

PB0183.1_Sry_2/Jaspar

Match Rank:9
Score:0.60
Offset:-6
Orientation:forward strand
Alignment:------AACCATGGGT-
TCACGGAACAATAGGTG

PB0132.1_Hbp1_2/Jaspar

Match Rank:10
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----AACCATGGGT---
NNTNNACAATGGGANNN