Information for motif2


Reverse Opposite:

p-value:1e-17
log p-value:-4.066e+01
Information Content per bp:1.664
Number of Target Sequences with motif918.0
Percentage of Target Sequences with motif11.21%
Number of Background Sequences with motif1487.0
Percentage of Background Sequences with motif8.43%
Average Position of motif in Targets476.9 +/- 440.6bp
Average Position of motif in Background474.7 +/- 442.8bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL009.1_DCE_S_II/Jaspar

Match Rank:1
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:GAGACAGGGT
--CACAGN--

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GAGACAGGGT
CCAGACAG---

MA0442.1_SOX10/Jaspar

Match Rank:3
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GAGACAGGGT
-ACAAAG---

MA0143.3_Sox2/Jaspar

Match Rank:4
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GAGACAGGGT
AACAAAGG--

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GAGACAGGGT
CCAGACRSVB-

MA0514.1_Sox3/Jaspar

Match Rank:6
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--GAGACAGGGT
AAAACAAAGG--

PB0137.1_Irf3_2/Jaspar

Match Rank:7
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GAGACAGGGT---
GGAGAAAGGTGCGA

MA0513.1_SMAD2::SMAD3::SMAD4/Jaspar

Match Rank:8
Score:0.54
Offset:-6
Orientation:reverse strand
Alignment:------GAGACAGGGT
AGGTGNCAGACAG---

MA0098.2_Ets1/Jaspar

Match Rank:9
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:GAGACAGGGT-----
NNNACAGGAAGTGGN

PB0166.1_Sox12_2/Jaspar

Match Rank:10
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----GAGACAGGGT-
AAACAGACAAAGGAAT