Information for motif20


Reverse Opposite:

p-value:1e-8
log p-value:-2.044e+01
Information Content per bp:1.845
Number of Target Sequences with motif149.0
Percentage of Target Sequences with motif1.82%
Number of Background Sequences with motif189.7
Percentage of Background Sequences with motif1.08%
Average Position of motif in Targets617.1 +/- 476.8bp
Average Position of motif in Background746.8 +/- 529.0bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.15
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:CGGGAGCGAC
-CGGAGC---

POL011.1_XCPE1/Jaspar

Match Rank:2
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CGGGAGCGAC-
-GGGCGGGACC

MA0469.1_E2F3/Jaspar

Match Rank:3
Score:0.64
Offset:-9
Orientation:reverse strand
Alignment:---------CGGGAGCGAC
NNGTGNGGGCGGGAG----

MA0470.1_E2F4/Jaspar

Match Rank:4
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CGGGAGCGAC
GGGCGGGAAGG--

MA0024.2_E2F1/Jaspar

Match Rank:5
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----CGGGAGCGAC
CGGGCGGGAGG---

MA0471.1_E2F6/Jaspar

Match Rank:6
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CGGGAGCGAC
GGGCGGGAAGG--

MA0062.2_GABPA/Jaspar

Match Rank:7
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CGGGAGCGAC
CCGGAAGTGGC

PB0140.1_Irf6_2/Jaspar

Match Rank:8
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----CGGGAGCGAC
NNNACCGAGAGTNNN

E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CGGGAGCGAC
GGCGGGAARN--

MA0599.1_KLF5/Jaspar

Match Rank:10
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CGGGAGCGAC
GGGGNGGGGC