Information for motif27


Reverse Opposite:

p-value:1e-6
log p-value:-1.514e+01
Information Content per bp:1.835
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif0.13%
Number of Background Sequences with motif3.8
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets364.9 +/- 229.0bp
Average Position of motif in Background613.8 +/- 730.1bp
Strand Bias (log2 ratio + to - strand density)2.7
Multiplicity (# of sites on avg that occur together)2.73
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0137.1_Irf3_2/Jaspar

Match Rank:1
Score:0.58
Offset:2
Orientation:forward strand
Alignment:GSGCAGAAMCGT----
--GGAGAAAGGTGCGA

POL011.1_XCPE1/Jaspar

Match Rank:2
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GSGCAGAAMCGT
GGGCGGGACC--

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:GSGCAGAAMCGT
--CCAGACRSVB

MF0009.1_TRP(MYB)_class/Jaspar

Match Rank:4
Score:0.54
Offset:6
Orientation:reverse strand
Alignment:GSGCAGAAMCGT--
------AACCGANA

T1ISRE(IRF)/Ifnb-Exp/Homer

Match Rank:5
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:GSGCAGAAMCGT----
----AGAAACGAAAGT

PB0145.1_Mafb_2/Jaspar

Match Rank:6
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---GSGCAGAAMCGT
CAATTGCAAAAATAT

PB0046.1_Mybl1_1/Jaspar

Match Rank:7
Score:0.52
Offset:1
Orientation:forward strand
Alignment:GSGCAGAAMCGT------
-TTGAAAACCGTTAATTT

Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:GSGCAGAAMCGT
-RCCGGAARYN-

PB0130.1_Gm397_2/Jaspar

Match Rank:9
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--GSGCAGAAMCGT--
AGCGGCACACACGCAA

MA0092.1_Hand1::Tcfe2a/Jaspar

Match Rank:10
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-GSGCAGAAMCGT
ATGCCAGACN---