| p-value: | 1e-6 |
| log p-value: | -1.427e+01 |
| Information Content per bp: | 1.530 |
| Number of Target Sequences with motif | 12.0 |
| Percentage of Target Sequences with motif | 0.15% |
| Number of Background Sequences with motif | 4.9 |
| Percentage of Background Sequences with motif | 0.03% |
| Average Position of motif in Targets | 286.3 +/- 230.7bp |
| Average Position of motif in Background | 833.6 +/- 714.3bp |
| Strand Bias (log2 ratio + to - strand density) | 0.0 |
| Multiplicity (# of sites on avg that occur together) | 1.00 |
| Motif File: | file (matrix)
reverse opposite |
| PDF Format Logos: | forward logo
reverse opposite |
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer
| Match Rank: | 1 |
| Score: | 0.84
| | Offset: | 0
| | Orientation: | reverse strand |
| Alignment: | ATGATAGATG--
ATGATKGATGRC |
|
|
|
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer
| Match Rank: | 2 |
| Score: | 0.78
| | Offset: | 1
| | Orientation: | reverse strand |
| Alignment: | ATGATAGATG-
-TGATTGATGA |
|
|
|
MA0070.1_PBX1/Jaspar
| Match Rank: | 3 |
| Score: | 0.75
| | Offset: | -1
| | Orientation: | reverse strand |
| Alignment: | -ATGATAGATG-
TTTGATTGATGN |
|
|
|
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer
| Match Rank: | 4 |
| Score: | 0.73
| | Offset: | 1
| | Orientation: | forward strand |
| Alignment: | ATGATAGATG---
-TGATTRATGGCY |
|
|
|
MA0594.1_Hoxa9/Jaspar
| Match Rank: | 5 |
| Score: | 0.70
| | Offset: | 1
| | Orientation: | reverse strand |
| Alignment: | ATGATAGATG--
-TGATTTATGGC |
|
|
|
PB0144.1_Lef1_2/Jaspar
| Match Rank: | 6 |
| Score: | 0.69
| | Offset: | -3
| | Orientation: | reverse strand |
| Alignment: | ---ATGATAGATG---
NNANTGATTGATNTTN |
|
|
|
PB0188.1_Tcf7l2_2/Jaspar
| Match Rank: | 7 |
| Score: | 0.65
| | Offset: | -3
| | Orientation: | reverse strand |
| Alignment: | ---ATGATAGATG---
NNANTGATTGATNNNN |
|
|
|
PH0134.1_Pbx1/Jaspar
| Match Rank: | 8 |
| Score: | 0.63
| | Offset: | -2
| | Orientation: | reverse strand |
| Alignment: | --ATGATAGATG-----
NNNNNATTGATGNGTGN |
|
|
|
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer
| Match Rank: | 9 |
| Score: | 0.61
| | Offset: | 1
| | Orientation: | reverse strand |
| Alignment: | ATGATAGATG---
-TGATTTATGGCC |
|
|
|
PH0169.1_Tgif1/Jaspar
| Match Rank: | 10 |
| Score: | 0.61
| | Offset: | -4
| | Orientation: | forward strand |
| Alignment: | ----ATGATAGATG---
GATATTGACAGCTGCGT |
|
|
|
