Information for motif31


Reverse Opposite:

p-value:1e-5
log p-value:-1.171e+01
Information Content per bp:1.940
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif0.20%
Number of Background Sequences with motif9.7
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets386.5 +/- 256.6bp
Average Position of motif in Background577.9 +/- 425.1bp
Strand Bias (log2 ratio + to - strand density)-1.5
Multiplicity (# of sites on avg that occur together)1.88
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0025.1_Dmbx1/Jaspar

Match Rank:1
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CACTGATCCTGT---
NNNATTAATCCGNTTNA

MA0467.1_Crx/Jaspar

Match Rank:2
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:CACTGATCCTGT-
--CTAATCCTCTT

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:3
Score:0.57
Offset:3
Orientation:forward strand
Alignment:CACTGATCCTGT-
---ACATCCTGNT

POL009.1_DCE_S_II/Jaspar

Match Rank:4
Score:0.56
Offset:7
Orientation:forward strand
Alignment:CACTGATCCTGT-
-------GCTGTG

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:5
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:CACTGATCCTGT
--CTGTTCCTGG

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:6
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CACTGATCCTGT
-GCTAATCC---

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:7
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CACTGATCCTGT
NTATYGATCH---

PB0051.1_Osr2_1/Jaspar

Match Rank:8
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:CACTGATCCTGT----
CNNNGCTACTGTANNN

PB0050.1_Osr1_1/Jaspar

Match Rank:9
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:CACTGATCCTGT----
TNNTGCTACTGTNNNN

PH0138.1_Pitx2/Jaspar

Match Rank:10
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---CACTGATCCTGT--
GNNNATTAATCCCTNCN