Information for motif33


Reverse Opposite:

p-value:1e-4
log p-value:-1.086e+01
Information Content per bp:1.530
Number of Target Sequences with motif142.0
Percentage of Target Sequences with motif1.73%
Number of Background Sequences with motif212.1
Percentage of Background Sequences with motif1.20%
Average Position of motif in Targets406.9 +/- 353.5bp
Average Position of motif in Background497.4 +/- 411.1bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0502.1_NFYB/Jaspar

Match Rank:1
Score:0.77
Offset:-6
Orientation:forward strand
Alignment:------ACCAATAA-
AAATGGACCAATCAG

PH0057.1_Hoxb13/Jaspar

Match Rank:2
Score:0.77
Offset:-2
Orientation:forward strand
Alignment:--ACCAATAA------
AACCCAATAAAATTCG

PH0078.1_Hoxd13/Jaspar

Match Rank:3
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--ACCAATAA------
CTACCAATAAAATTCT

POL004.1_CCAAT-box/Jaspar

Match Rank:4
Score:0.74
Offset:-4
Orientation:forward strand
Alignment:----ACCAATAA
ACTAGCCAATCA

MA0060.2_NFYA/Jaspar

Match Rank:5
Score:0.74
Offset:-3
Orientation:reverse strand
Alignment:---ACCAATAA-------
TGGACCAATCAGCACTCT

PH0107.1_Msx2/Jaspar

Match Rank:6
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----ACCAATAA-----
GAAGACCAATTAGCGCT

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:7
Score:0.71
Offset:0
Orientation:forward strand
Alignment:ACCAATAA--
NCYAATAAAA

PH0005.1_Barhl1/Jaspar

Match Rank:8
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----ACCAATAA----
AACAACCAATTAATTC

MA0125.1_Nobox/Jaspar

Match Rank:9
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:ACCAATAA
ACCAATTA

PH0006.1_Barhl2/Jaspar

Match Rank:10
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----ACCAATAA----
AAAAACCAATTAAGAA