Information for motif40


Reverse Opposite:

p-value:1e-3
log p-value:-7.288e+00
Information Content per bp:1.959
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.10%
Number of Background Sequences with motif4.1
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets320.0 +/- 209.5bp
Average Position of motif in Background121.7 +/- 50.8bp
Strand Bias (log2 ratio + to - strand density)-2.2
Multiplicity (# of sites on avg that occur together)2.75
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0526.1_USF2/Jaspar

Match Rank:1
Score:0.70
Offset:3
Orientation:reverse strand
Alignment:CTTAGTCACCTG--
---GGTCACATGAC

E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:2
Score:0.70
Offset:4
Orientation:forward strand
Alignment:CTTAGTCACCTG--
----NNCACCTGNN

MA0093.2_USF1/Jaspar

Match Rank:3
Score:0.69
Offset:3
Orientation:reverse strand
Alignment:CTTAGTCACCTG--
---GGTCACGTGGC

MA0490.1_JUNB/Jaspar

Match Rank:4
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CTTAGTCACCTG
ATGAGTCATCN-

MA0477.1_FOSL1/Jaspar

Match Rank:5
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CTTAGTCACCTG
NATGAGTCACC--

MA0103.2_ZEB1/Jaspar

Match Rank:6
Score:0.66
Offset:3
Orientation:forward strand
Alignment:CTTAGTCACCTG
---CCTCACCTG

MA0478.1_FOSL2/Jaspar

Match Rank:7
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CTTAGTCACCTG
NTGAGTCATCN-

Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer

Match Rank:8
Score:0.64
Offset:4
Orientation:forward strand
Alignment:CTTAGTCACCTG--
----GTCACGTGGT

NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer

Match Rank:9
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:CTTAGTCACCTG--
----GTCACGTGGM

PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer

Match Rank:10
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CTTAGTCACCTG
GGTTAGAGACCT-