Information for motif41


Reverse Opposite:

p-value:1e-2
log p-value:-5.904e+00
Information Content per bp:1.980
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.10%
Number of Background Sequences with motif5.4
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets394.4 +/- 221.9bp
Average Position of motif in Background758.9 +/- 405.7bp
Strand Bias (log2 ratio + to - strand density)4.5
Multiplicity (# of sites on avg that occur together)2.88
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0516.1_SP2/Jaspar

Match Rank:1
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--CCCGCCTCTCTC-
GCCCCGCCCCCTCCC

PB0164.1_Smad3_2/Jaspar

Match Rank:2
Score:0.73
Offset:-5
Orientation:forward strand
Alignment:-----CCCGCCTCTCTC
TACGCCCCGCCACTCTG

MA0079.3_SP1/Jaspar

Match Rank:3
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CCCGCCTCTCTC
GCCCCGCCCCC---

POL003.1_GC-box/Jaspar

Match Rank:4
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----CCCGCCTCTCTC
NAGCCCCGCCCCCN--

Sp1(Zf)/Promoter/Homer

Match Rank:5
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---CCCGCCTCTCTC
GGCCCCGCCCCC---

PB0110.1_Bcl6b_2/Jaspar

Match Rank:6
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---CCCGCCTCTCTC-
ATCCCCGCCCCTAAAA

MA0471.1_E2F6/Jaspar

Match Rank:7
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----CCCGCCTCTCTC
NCTTCCCGCCC-----

E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer

Match Rank:8
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CCCGCCTCTCTC
TTCCCGCCWG----

PB0202.1_Zfp410_2/Jaspar

Match Rank:9
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----CCCGCCTCTCTC-
TCACCCCGCCCCAAATT

PB0039.1_Klf7_1/Jaspar

Match Rank:10
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----CCCGCCTCTCTC
TCGACCCCGCCCCTAT-