Information for motif42


Reverse Opposite:

p-value:1e0
log p-value:-1.674e+00
Information Content per bp:1.931
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.09%
Number of Background Sequences with motif10.4
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets259.4 +/- 253.4bp
Average Position of motif in Background794.2 +/- 527.0bp
Strand Bias (log2 ratio + to - strand density)-3.8
Multiplicity (# of sites on avg that occur together)2.14
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0122.1_Nkx3-2/Jaspar

Match Rank:1
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CTSCACTCCSAG
-NCCACTTAN--

MA0009.1_T/Jaspar

Match Rank:2
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CTSCACTCCSAG
-TTCACACCTAG

MA0130.1_ZNF354C/Jaspar

Match Rank:3
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CTSCACTCCSAG
ATCCAC------

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CTSCACTCCSAG
-GCCACACCCA-

PB0091.1_Zbtb3_1/Jaspar

Match Rank:5
Score:0.57
Offset:-7
Orientation:forward strand
Alignment:-------CTSCACTCCSAG
AATCGCACTGCATTCCG--

MA0493.1_Klf1/Jaspar

Match Rank:6
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CTSCACTCCSAG
GGCCACACCCA-

EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer

Match Rank:7
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CTSCACTCCSAG
GGCCACACCCAN

KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer

Match Rank:8
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CTSCACTCCSAG
-GCCMCRCCCH-

MA0019.1_Ddit3::Cebpa/Jaspar

Match Rank:9
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--CTSCACTCCSAG
AGATGCAATCCC--

MA0599.1_KLF5/Jaspar

Match Rank:10
Score:0.54
Offset:1
Orientation:forward strand
Alignment:CTSCACTCCSAG
-GCCCCGCCCC-